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Nature Volume 551 Issue 7679
 
This Week  
 
Editorials 
 
Skin regeneration with insights
A feat in stem-cell therapy highlights what can be achieved when basic and clinical research combine to advance biological understanding and treatment.
Too many academics study the same people
Researchers should recognize communities that feel over-researched and under-rewarded.
Grant recipients can still give objective advice
The US environment agency should not ban researchers it funds from its advisory boards.
 
Advertising.
World View 
 
Build the Ebola database in Africa
To build trust, capacity and utility, put local researchers in charge of planned platform, says Brian Conton.
 
Seven Days 
 
Rohingya refugees, Bulgarian protests and a prize for negative results
The week in science: 3–9 November 2017.
Research Highlights 
 
This issue's Research Highlights
Selections from the scientific literature.
 
 


Better visualize, analyze, and phenotype immune cells in situ in FFPE tissue sections and TMAs

Learn how Vectra Polaris™ quantitative pathology imaging system provides unparalleled speed and performance for extracting proteomic and morphometric information from tissue sections.

Download Application Note
 
 
News in Focus
Genetically modified apple reaches US stores, but will consumers bite?
Success for the ‘Arctic apple’ could herald a new wave of lab-grown foods.
Amy Maxmen
  Pay for US postdocs varies wildly by institution
Analysis of universities' salary data suggests major disparities in pay for early-career researchers.
Chris Woolston
Newly discovered orangutan species is also the most endangered
The first new species of great ape described in more than eight decades faces threats to its habitat.
April Reese
  US environment agency bars scientists it funds from serving on its advisory boards
The US Environmental Protection Agency says the policy will address potential conflicts of interest, but scientists raise alarms.
Jeff Tollefson
Energy researcher sues the US National Academy of Sciences for millions of dollars
Rare move stems from a conflict over two journal articles about renewable energy.
Chris Woolston
  Dark-matter hunt fails to find the elusive particles
Physicists begin to embrace alternative explanations for the missing material.
Elizabeth Gibney
Features 
 
The bitter battle over the world’s most popular insecticides
As regulators consider a ban on neonicotinoids, debate rages over the harm they cause to bees.
Daniel Cressey
Multimedia 
Nature Podcast: 9 November 2017
This week, a potential stem cell treatment for a genetic skin condition, and the disappearing axolotl.
 
 
 
Register now for the AHA's Scientific Sessions in Anaheim, CA, Nov. 11-15, to experience the future of cardiovascular science and medicine. Key events include: Health Tech Summit ft. Silicon Valley's biggest names; the release of 2017's AHA/ACC Hypertension Guidelines; and Frontiers in Science Summits.
 
 
Comment
Four ethical priorities for neurotechnologies and AI
Artificial intelligence and brain–computer interfaces must respect and preserve people's privacy, identity, agency and equality, say Rafael Yuste, Sara Goering and colleagues.
Rafael Yuste, Sara Goering, Blaise Agüera y Arcas et al.
The catalogue that made metrics, and changed science
As new ways emerge to assess research, Alex Csiszar recalls how the first one transformed the practice and place of science in society.
Alex Csiszar
Books and Arts 
 
Polar exploration: The forgotten journey
Huw Lewis-Jones revisits a pioneering, ill-fated expedition to map the Arctic.
Huw Lewis-Jones
Books in brief
Barbara Kiser reviews five of the week's best science picks.
Andrew Robinson
Correspondence 
 
Bibliometrics: Seven LIGO authors not accounted for
Michael Twidale
Science popularization: Research videos in indigenous languages
Andre Ramos
Public participation: Time for a definition of citizen science
Florian Heigl and Daniel Dorler
Reproducibility: Developing standard measures for biology
Julian Braybrook
Grant winners: Track social impact of grant types in Africa
Joanna Chataway and Rebecca Hanlin
Obituary 
 
Vladimir Voevodsky (1966–2017)
Mathematician who revolutionized algebraic geometry and computer proof.
Daniel R. Grayson
 
 
Specials
TECHNOLOGY FEATURE 
 
Ultrasound for the brain
Ultrasonic energy can be harnessed to alter brain activity and treat disease — but first, scientists need to learn how it works.
Esther Landhuis
Outlook: Bladder cancer 
 
Bladder cancer
Michelle Grayson
  Unlocking bladder cancer
Chris Berdik
Therapeutics: Spoilt for choice
Michael Eisenstein
  Perspective: Bridging the gender gap
James McKiernan, Denise Asafu-Adjei
Microbiome: A bag of surprises
Claire Ainsworth
  Theatre: The bladder's tale
Tammy Worth
Q&A: Mechele Leon: Take it away
Tammy Worth
  Genetics: A clearer view
Jeanne Erdmann
Egypt: The flatworm's revenge
Louise Sarant
  Diagnostics: A flow of information
Chelsea Wald
Bladder cancer: 4 big questions
Chris Berdik
 
Produced with support from:
Sponsor
SPOTLIGHT 
 
Neuroscience starts talking
The previously introverted discipline is opening up to collaboration.
Andrew Curry
 
 
Research
NEW ONLINE 
 
Gene therapy: Transgenic stem cells replace skin
The treatment of a patient affected by an incurable genetic skin disease demonstrates the efficacy, feasibility and safety of replacing almost the whole skin using genetically corrected stem cells.
Dynamics of P-type ATPase transport revealed by single-molecule FRET
Single-molecule fluorescence resonance energy transfer is used to identify the rate-limiting step and new intermediates in the conformational cycle of the Listeria monocytogenes calcium transporter LMCA1.
Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity
IgA+ B cells expressing programmed death ligand 1 (PD-L1) and interleukin 10 accumulate in the inflamed livers of humans and mice with non-alcoholic fatty liver disease where they promote the progression to hepatocellular carcinoma by limiting the local activation of PD-1-expressing CD8+ T cells.
Regeneration of the entire human epidermis using transgenic stem cells
Autologous transgenic epidermal stem cell cultures are used to reconstitute almost the entire epidermis of a patient with severe junctional epidermolysis bullosa.
A single-cell survey of the small intestinal epithelium
Profiling of 53,193 individual epithelial cells from the mouse small intestine identifies previously unknown cell subtypes and corresponding gene markers, providing insight into gut homeostasis and response to pathogens.
Collective emission of matter-wave jets from driven Bose–Einstein condensates
Sufficiently strong modulation of the interaction strength in a Bose–Einstein condensate induces inelastic atom–atom scattering and causes collective emission of matter-wave jets from the condensate.
BCAT1 restricts αKG levels in AML stem cells leading to IDHmut-like DNA hypermethylation
The mechanistic basis for the role of the metabolic enzyme BCAA transaminase 1 (BCAT1) in acute myeloid leukaemias.
Identification of unique neoantigen qualities in long-term survivors of pancreatic cancer
The analysis of T-cell antigens in long-term survivors of pancreatic ductal adenocarcinoma suggests that neoantigen immunogenicity and quality, not purely quantity, correlate with survival.
A neoantigen fitness model predicts tumour response to checkpoint blockade immunotherapy
An immune fitness model for tumours under checkpoint blockade immunotherapy is proposed, through which the authors show that the presentation and recognition properties of dominant neoantigens distributed over tumour subclones are predictive of response in melanoma and lung cancer cohorts.
Parallel palaeogenomic transects reveal complex genetic history of early European farmers
In European Neolithic populations, the arrival of farmers prompted admixture with local hunter-gatherers over many centuries, resulting in distinct signatures in each region due to a complex series of interactions.
A ubiquitin-dependent signalling axis specific for ALKBH-mediated DNA dealkylation repair
A signalling mechanism in human cells for sensing DNA damage induced by alkylation involves ubiquitin-dependent recruitment of the alkylation repair complex ASCC to the vicinity of the damage and co-localization with transcription and splicing factors.
Structure and assembly of the Ebola virus nucleocapsid
Application of cryo-electron tomography and subtomogram averaging to determine the structure of the Ebola virus nucleocapsid within intact viruses and recombinant nucleocapsid-like assemblies.
Structure of the human MHC-I peptide-loading complex
Electron cryo-microscopy structures of the human peptide-loading complex shed light on its operation and on the onset of adaptive immune responses.
Discovery of a big void in Khufu’s Pyramid by observation of cosmic-ray muons
Erratum: Enhanced sensitivity at higher-order exceptional points
Erratum: Probabilistic reanalysis of twentieth-century sea-level rise
Erratum: Non-homeostatic body weight regulation through a brainstem-restricted receptor for GDF15
Corrigendum: Widespread movement of meltwater onto and across Antarctic ice shelves
Corrigendum: Superparamagnetic enhancement of thermoelectric performance
Corrigendum: High-throughput discovery of novel developmental phenotypes
News and Views 
 
Brain technology: Neurons recorded en masse
Edward M. Callaway, Anupam K. Garg
Astronomy: The star that would not die
Stan Woosley
Epitranscriptomics: Shrinking maps of RNA modifications
Anya V. Grozhik, Samie R. Jaffrey
 

KAUST Discovery: Research into sustainable agriculture

 

Plant Scientist Mark Tester’s research into growing crops on poor-quality soils or on otherwise barren land is discovering some ground-breaking findings.

 

Find out more on how Tester’s research could one day help feed the world.

 

Read more here >> 
50 & 100 Years Ago
 
Chemical biology: Organic dyes for deep bioimaging
Martin J. Schnermann
Physical chemistry: Ice niceties
Andrew Mitchinson
 
Oceanography: Mixed up at the sea floor
Andrew L. Stewart
Neurobiology: A genetic cause of age-related decline
Patrick T. McGrath
 
Articles 
 
Abyssal ocean overturning shaped by seafloor distribution
The geometry of the ocean floor sets key regime transitions in the circulation of deep ocean waters.
C. de Lavergne, G. Madec, F. Roquet et al.
Creation of forest edges has a global impact on forest vertebrates
Fragmentation of forest ecosystems produces forest edges, which affect the distribution of many analysed vertebrate species; smaller-bodied amphibians, larger reptiles and medium-sized mammals experience a larger reduction in suitable habitat than other forest-core species.
M. Pfeifer, V. Lefebvre, C. A. Peres et al.
Astrocytic neuroligins control astrocyte morphogenesis and synaptogenesis
Astrocyte morphogenesis depends on interactions between astrocytic neuroligins and neuronal neurexins.
Jeff A. Stogsdill, Juan Ramirez, Di Liu et al.
Genetic variation in glia–neuron signalling modulates ageing rate
Identifying the gene polymorphisms that are the foundations of variation in glia–neuron signalling in Caenorhabditis elegans provides insight into highly variable age-related declines in worm behaviours.
Jiang-An Yin, Ge Gao, Xi-Juan Liu et al.
Structures of transcription pre-initiation complex with TFIIH and Mediator
Cryo-electron microscopy structures of the yeast pre-initiation complex (PIC) and its complex with core Mediator provide insights into the opening of promoter DNA and the initiation of transcription.
S. Schilbach, M. Hantsche, D. Tegunov et al.
Letters 
 
Energetic eruptions leading to a peculiar hydrogen-rich explosion of a massive star
Observations of an event (several energetic eruptions leading to a terminal explosion that is surprisingly hydrogen-rich) with the spectrum of a supernova do not match with other observations of supernovae.
Iair Arcavi, D. Andrew Howell, Daniel Kasen et al.
History-independent cyclic response of nanotwinned metals
In copper components containing highly oriented nanotwins, correlated ‘necklace’ dislocations moving back and forth offer an unusually fatigue-resistant response to engineering stress.
Qingsong Pan, Haofei Zhou, Qiuhong Lu et al.
Role of stacking disorder in ice nucleation
Stacking-disordered ice crystallites are shown to have an ice nucleation rate much higher than predicted by classical nucleation theory, which needs to be taken into account in cloud modelling.
Laura Lupi, Arpa Hudait, Baron Peters et al.
Detecting evolutionary forces in language change
Analyses of digital corpora of annotated texts reveal the influence of stochastic drift versus selection in grammatical shifts in English and provide a general method for quantitatively testing theories of language change.
Mitchell G. Newberry, Christopher A. Ahern, Robin Clark et al.
Kctd13 deletion reduces synaptic transmission via increased RhoA
Experimental evidence that global Kctd13 reduction leads to increased RhoA levels that reduce synaptic transmission, implicating RhoA as a potential therapeutic target for neuropsychiatric disorders associated with copy-number variants that include KCTD13.
Christine Ochoa Escamilla, Irina Filonova, Angela K. Walker et al.
Fully integrated silicon probes for high-density recording of neural activity
New silicon probes known as Neuropixels are shown to record from hundreds of neurons simultaneously in awake and freely moving rodents.
James J. Jun, Nicholas A. Steinmetz, Joshua H. Siegle et al.
Ultra-selective looming detection from radial motion opponency
The discovery of a visual-looming-sensitive neuron, LPLC2, that provides input to the Drosophila escape pathway, and uses dendrites patterned to integrate directionally selective inputs to selectively encode outward motion.
Nathan C. Klapoetke, Aljoscha Nern, Martin Y. Peek et al.
Nutrient co-limitation at the boundary of an oceanic gyre
Nutrient amendment experiments at the boundary of the South Atlantic gyre reveal extensive regions in which nitrogen and iron are co-limiting, with other micronutrients also approaching co-deficiency; such limitations potentially increase phytoplankton community diversity.
Thomas J. Browning, Eric P. Achterberg, Insa Rapp et al.
Drug-tolerant persister cancer cells are vulnerable to GPX4 inhibition
Cancer persister cells, which survive cytotoxic treatments, are shown to be sensitive to inhibition of the lipid hydroperoxidase GPX4.
Matthew J. Hangauer, Vasanthi S. Viswanathan, Matthew J. Ryan et al.
The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution
Transcriptome-wide mapping of N1-methyladenosine (m1A) at single-nucleotide resolution reveals m1A to be scarce in cytoplasmic mRNA, to inhibit translation, and to be highly dynamic at a single site in a mitochondrial mRNA.
Modi Safra, Aldema Sas-Chen, Ronit Nir et al.
Errata 
 
Erratum: Strong constraints on aerosol–cloud interactions from volcanic eruptions
Florent F. Malavelle, Jim M. Haywood, Andy Jones et al.
Erratum: Genome editing reveals a role for OCT4 in human embryogenesis
Norah M. E. Fogarty, Afshan McCarthy, Kirsten E. Snijders et al.
Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project
Jason Lloyd-Price, Anup Mahurkar, Gholamali Rahnavard et al.
 
 
Careers & Jobs
Feature 
 
Behaviour: A lookout for luck
Kendall Powell
Column 
 
Tackling bias head on
Shari L. Gallop
Futures 
Iago v2.0
Thus credulous fools are caught.
Karlo Yeager Rodríguez
 
 
 
 
 

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naturejobs.com Science jobs of the week

 
 
 

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Schrodinger, Inc

 
 
 
 
 

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University of Virginia

 
 
 
 
 

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LifeArc 

 
 
 
 
 

PhD Studentships

 
 

Institute of Cancer Research (ICR)

 
 
 
 
 

In vivo pharmacology Group Leader

 
 

Evotec Toulouse

 
 
 
 
 

Full Professor of Quantitative Systems Pharmacology

 
 

Universiteit Leiden

 
 
 
 
 

Assistant or Associate Professor of Pharmacology

 
 

Yale University School of Medicine

 
 
 
 
 

Principal Scientist - In Vivo Pharmacology ID / CMD

 
 

Merck & Co. Inc.

 
 
 
 
 

Assistant / Associate Professor, Department of Pharmacology and Therapeutics

 
 

University of Manitoba

 
 
 
 
 

McGill University, Post-Doctoral Fellow- Biochemical Pharmacology

 
 

McGill University- Department of Pharmacology & Therapeutics

 
 
 
 

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natureevents.com - The premier science events website

natureevents directory featured events

 
 
 
 

World Congress On Pharmaceuticals And Drug Safety

 
 

18 March 2018 New Delhi, India

 
 
 
 

Natureevents Directory is the premier resource for scientists looking for the latest scientific conferences, courses, meetings and symposia. Featured across Nature Research journals and centrally at natureevents.com it is an essential reference guide to scientific events worldwide.

 
 
 
 
 


 
 


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