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  journal cover  
Nature Volume 538 Issue 7623
 
This Week  
 
 
Editorials  
 
 
 
Oppose the UK Higher Education and Research Bill
The proposed law would demolish agreements that protect British universities from political interference.
Premature burial, show business and the Nobel prize
Awards week shows the value of a strong brand identity.
The limits to human lifespan must be respected
Lengthening our lives will come at a cost.
 
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World View  
 
 
 
Corporate culture has no place in academia
‘Academic capitalism’ contributed to the mishandling of the Macchiarini case by officials at the Karolinska Institute in Sweden, argues Olof Hallonsten.
 
Seven Days  
 
 
 
A Mars rocket, an artificial pancreas and a plutonium problem
The week in science: 30 September–6 October 2016
Research Highlights  
 
 
 
Biomaterials: 'Bones' made with 3D printer | Astronomy: Magnetism drives star birth | Neuroscience: Hunger overrides other motivations | Materials: Graphene oxide is stiff yet bendy | Cancer immunotherapy: Dual action of targeted T cells | Astronomy: How black hole obscures itself | Cardiovascular biology: 'Good' fat may cut heart disease | Microbiology: Toad probiotic fights fungus | Materials: Shape-shifting gel blooms | Conservation: Restored forests ignore history
 
 
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News in Focus
 
Mission accomplished: Rosetta crashes into comet
Craft sends back wealth of images in 19-kilometre descent.
Elizabeth Gibney
  US left with just one working fusion reactor — for now
Design flaw may have doomed machine at Princeton Plasma Physics Lab.
Jeff Tollefson
Syrian seed bank gets new home away from war
Ancient genes will soon be available to researchers again, but the move poses its own challenges.
Shaoni Bhattacharya
  UK bioethicists eye designer babies and CRISPR cows
Panel will focus on the implications of gene editing in human reproduction and livestock.
Heidi Ledford
Physics of 2D exotic matter wins Nobel
British-born theorists recognized for work on topological phases.
Elizabeth Gibney, Davide Castelvecchi
  Medicine Nobel for research on how cells 'eat themselves'
Japanese biologist Yoshinori Ohsumi recognized for work on autophagy.
Richard Van Noorden, Heidi Ledford
Features  
 
 
 
Can we open the black box of AI?
Artificial intelligence is everywhere. But before scientists trust it, they first need to understand how machines learn.
Davide Castelvecchi
Warning to forest destroyers: this scientist will catch you
Matthew Hansen uses satellites to spot deforestation as it happens.
Gabriel Popkin
Multimedia  
 
 
Nature Podcast: 6 October 2016
This week, a limit to lifespan, AI's black box problem, and ageing stem cells
Nature Extra: Backchat September 2016
The challenges of getting into science, getting a decent salary once you’re in, and funding through philanthropy.
Correction  
 
 
Correction
 
 
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Comment
 
Clean up energy innovation
Agree on definitions and baselines to track investments in decarbonizing the world's energy system, urge Lucien Georgeson, Mark Maslin and Martyn Poessinouw.
Lucien Georgeson, Mark Maslin, Martyn Poessinouw
Renewables need a grand-challenge strategy
Launch a global clean-energy initiative to set priorities that galvanize researchers to deliver breakthroughs, write Alan Bernstein and colleagues.
Alan Bernstein, Edward H. Sargent, Alán Aspuru-Guzik et al.
Autumn Books  
 
 
 
Theoretical physics: Windows on the weird
Robert P. Crease weighs up a theoretical-physics study that cracks open a strange vista.
Robert P. Crease
Climate science: Denialism deciphered
Dave Reay enjoys a wry history of US climate-science obfuscation.
Dave Reay
New in paperback
Highlights of this season's releases
Emily Banham
Memoir: Love and uncertainty
Werner Heisenberg's wartime letters to his wife record scientific and personal privations, finds Ann Finkbeiner.
Ann Finkbeiner
Theoretical physics: The emperor's new physics
Richard Dawid examines a critique of quantum mechanics, string theory and inflationary cosmology.
Richard Dawid
History: Addiction and the Reich
Paul Weindling ponders a study of drug use among the Nazi leadership and military.
Paul Weindling
Cybernetics: A mathematician of mind
Manuel Blum examines a biography of cybernetics pioneer Warren McCulloch and his revolutionary times.
Manuel Blum
Correspondence  
 
 
 
Monitoring: safeguarding the world's largest lake
Maxim A. Timofeyev
  Pollution: centralized pilot for e-waste processing
Ya Tang
Open data: policies need policing
Dominique Roche
  Open data: curation is under-resourced
Sabina Leonelli
Snakebites: costing recombinant antivenoms
Andreas H. Laustsen
 
Obituary  
 
 
 
Donald Ainslie Henderson (1928–2016)
Epidemiologist who led the effort to eradicate smallpox.
Joel Breman
 
 
Specials
 
TOOLBOX  
 
 
 
Democratic databases: science on GitHub
Scientists are turning to a software–development site to share data and code.
Jeffrey Perkel
 
 
Research
 
NEW ONLINE  
 
 
 
Ageing: Measuring our narrow strip of life
In line with previous research, a demographic analysis corroborates the presence of a limit to human lifespan, indicating that increases in life expectancy are likely to slow down or stop over the coming years.
Cancer: A shocking protein complex
Heat-shock proteins have been found to form part of a large protein complex, called the epichaperome, that improves the survival of some cancer cells. This complex might offer a new target for cancer treatment.
Single-cell RNA-seq identifies a PD-1hi ILC progenitor and defines its developmental pathway
The mechanism of force transmission at bacterial focal adhesion complexes
Quantum dynamics of simultaneously measured non-commuting observables
Simultaneous measurement of two incompatible observables in a superconducting qubit placed in a cavity shows that the quantum dynamics of the system is governed by the uncertainty principle and that the wavefunction collapse is replaced by persistent diffusion.
Metal–organic frameworks as selectivity regulators for hydrogenation reactions
The flavouring, perfume and pharmaceutical industries rely on the selective hydrogenation of α,β-unsaturated aldehydes to generate unsaturated alcohols; here, a new type of highly selective catalyst is described in which platinum nanoparticles are sandwiched between a core and a shell of a metal−organic framework.
Real-space investigation of energy transfer in heterogeneous molecular dimers
Scanning tunnelling microscopy is shown to be effective for probing energy transfer in a molecular dimer with submolecular resolution in real space.
Pore architecture of TRIC channels and insights into their gating mechanism
X-ray structures of C. elegans TRIC-B subtype channels reveal that the membrane proteins form a symmetrical homotrimeric complex, and a mechanistic model to explain the complex gating mechanism of TRIC channels is proposed.
Tissue-specific mutation accumulation in human adult stem cells during life
Stem cells of the liver, colon and small intestine gradually accumulate mutations throughout life at a similar rate even though cancer incidence varies greatly among these tissues.
X-ray structure of the human α4β2 nicotinic receptor
Nicotinic acetylcholine receptors are ligand-gated ion channels that mediate fast chemical neurotransmission; here, the first X-ray crystal structure of a nicotinic receptor is reported, revealing how nicotine stabilizes the receptor in a non-conducting, desensitized conformation.
A cholinergic basal forebrain feeding circuit modulates appetite suppression
A mouse study reveals that acetylcholine signalling networks have a role in the regulation of body weight homeostasis, with increased activity of cholinergic neurons decreasing food consumption through downstream hypothalamic targets.
Evidence for a limit to human lifespan
Demographic analysis of life expectancy and maximum reported age at death provides evidence that human lifespan has reached its natural limit.
Formation of new chromatin domains determines pathogenicity of genomic duplications
Genomic duplications in the SOX9 region are associated with human disease phenotypes; a study using human cells and mouse models reveals that the duplications can cause the formation of new higher-order chromatin structures called topologically associated domains (TADs) thereby resulting in changes in gene expression.
The epichaperome is an integrated chaperome network that facilitates tumour survival
Chaperomes are dynamic assemblies of proteins that regulate cellular homeostasis but specific cellular stresses remodel chaperome components into a stable chaperome network called the epichaperome, which might offer a new cancer target.
Evolution of Hoxa11 regulation in vertebrates is linked to the pentadactyl state
The mutually exclusive expression of the Hoxa11 and Hoxa13 genes is required for pentadactyl (five-digit) limbs and is proposed to have contributed to the transition from several digits polydactyl (several-digit) limbs in the earliest tetrapods.
Genomic insights into the peopling of the Southwest Pacific
Analysis of ancient DNA from four individuals who lived in Vanuatu and Tonga between 2,300 and 3,100 years ago suggests that the Papuan ancestry seen in present-day occupants of this region was introduced at a later date.
De novo assembly and phasing of a Korean human genome OPEN
De novo assembly and phasing of the genome of an individual from Korea using a combination of different sequencing approaches provides a useful population-specific reference genome and represents the most contiguous human genome assembly so far.
Erratum: Pancreatic stellate cells support tumour metabolism through autophagic alanine secretion
Erratum: Pore-forming activity and structural autoinhibition of the gasdermin family
Corrigendum: Slowly fading super-luminous supernovae that are not pair-instability explosions
News and Views  
 
 
 
Catalysis: Cobalt gets in shape
Michael Claeys
Cancer: Acidic shield puts a chink in p53's armour
Michelle C. Barton
Biogeochemistry: Rebalancing the global methane budget
Grant Allen
 
Nature Outlook: Pain

Nature Outlook: Pain presents the latest research into the causes of, and treatments for, chronic and neuropathic pain, allowing you to stay up to date on the biggest developments within the field of pain.

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Particle physics: Search for neutrinoless double-β decay
Giorgio Gratta
 
Human migration: Climate and the peopling of the world
Peter B. deMenocal, Chris Stringer
Reviews  
 
 
 
Circuit-based interrogation of sleep control
Weber and Dan review our understanding of the neural circuits controlling sleep, focusing on the advances in measurement and manipulation of neuronal activity and circuit tracing from genetically defined cell types.
Franz Weber, Yang Dan
Articles  
 
 
 
Structural insight into the role of the Ton complex in energy transduction
Structural studies shed light on the function and stoichiometry of the Ton complex, which harnesses the proton motive force across the bacterial inner membrane to transduce energy to the outer membrane.
Hervé Celia, Nicholas Noinaj, Stanislav D. Zakharov et al.
X-ray structures define human P2X3 receptor gating cycle and antagonist action
Structures of the human P2X3 receptor in its open, closed, desensitized and antagonist-bound states show the receptor’s gating mechanism and the basis of antagonist binding.
Steven E. Mansoor, Wei Lü, Wout Oosterheert et al.
Letters  
 
 
 
High-molecular-weight organic matter in the particles of comet 67P/Churyumov–Gerasimenko
The COSIMA mass spectrometer on the Rosetta spacecraft has analysed the solid organic matter found in dust particles emitted by comet 67P/Churyumov–Gerasimenko; this matter is similar to the insoluble organic matter extracted from carbonaceous chondrites such as the Murchison meteorite, but is perhaps more primitive.
Nicolas Fray, Anaïs Bardyn, Hervé Cottin et al.
Nodal-chain metals
A hitherto unrecognized type of fermionic excitation in metals is described, which forms a chain of connected loops in momentum space (a nodal chain) along which conduction and valence bands touch.
Tomáš Bzdušek, QuanSheng Wu, Andreas Rüegg et al.
Surface patterning of nanoparticles with polymer patches
Surface patterning of nanoparticles with polymer patches is achieved in a poor solvent for the polymer by controlling the ratio between the sizes of polymer molecules and nanoparticles.
Rachelle M. Choueiri, Elizabeth Galati, Héloïse Thérien-Aubin et al.
Cobalt carbide nanoprisms for direct production of lower olefins from syngas
Lower olefins are hydrocarbons that are widely used in the chemical industry, and can be generated from syngas by the ‘Fischer–Tropsch to olefins’ process; here, a new catalyst is described that can generate lower olefins from syngas with high selectivity, with little formation of undesirable methane.
Liangshu Zhong, Fei Yu, Yunlei An et al.
Upward revision of global fossil fuel methane emissions based on isotope database
Revisions in isotopic source signatures reveal that global total fossil fuel methane emissions from industry plus natural geological seepage are much larger than thought.
Stefan Schwietzke, Owen A. Sherwood, Lori M. P. Bruhwiler et al.
Late Pleistocene climate drivers of early human migration
The dispersal of Homo sapiens across the Arabian Peninsula and the Levant during the last glacial period was not a single event, but occurred in four astronomically-paced migration waves.
Axel Timmermann, Tobias Friedrich
A cross-modal genetic framework for the development and plasticity of sensory pathways
In the neocortex, sensory information flows into areas specific for a particular modality through parallel thalamocortical circuits, consisting of first order and higher order nuclei connecting to primary and secondary cortical areas, respectively; here, the authors identify common developmental genetic programs that organize these conserved features in parallel sensory pathways.
Laura Frangeul, Gabrielle Pouchelon, Ludovic Telley et al.
Autocrine BDNF–TrkB signalling within a single dendritic spine
Live fluorescent imaging of murine hippocampal slices shows that NMDAR-dependent glutamate signalling leads to postsynaptic BDNF release, with associated signalling of its receptor, TrkB, on the same dendritic spine, suggesting autocrine BDNF signalling.
Stephen C. Harward, Nathan G. Hedrick, Charles E. Hall et al.
Rho GTPase complementation underlies BDNF-dependent homo- and heterosynaptic plasticity
The three small GTPases Rac1, RhoA and Cdc42 are differentially involved in structural long-term potentiation of rodent dendritic spines, simultaneously ensuring signal specificity and also priming the system for plasticity.
Nathan G. Hedrick, Stephen C. Harward, Charles E. Hall et al.
The lipolysis pathway sustains normal and transformed stem cells in adult Drosophila
Attenuating the lipolysis pathway in Drosophila melanogaster by modulation of the COP1–Arf1 signalling complex induced necrosis in stem cells and led to their engulfment by differentiated cells.
Shree Ram Singh, Xiankun Zeng, Jiangsha Zhao et al.
XPO1-dependent nuclear export is a druggable vulnerability in KRAS-mutant lung cancer
A multi-genomic approach identifies the addiction of KRAS-mutant lung cancer cells to XPO1-dependent nuclear export, offering a new therapeutic opportunity.
Jimi Kim, Elizabeth McMillan, Hyun Seok Kim et al.
Acetylation-regulated interaction between p53 and SET reveals a widespread regulatory mode
The acidic domain of SET binds and represses unacetylated p53, but this interaction is prevented by cellular-stress-induced p53 CTD acetylation.
Donglai Wang, Ning Kon, Gorka Lasso et al.
Accessory subunits are integral for assembly and function of human mitochondrial complex I
Gene-editing technology and large-scale proteomics are used to provide insights into the modular assembly of the human mitochondrial respiratory chain complex I, as well as identifying new assembly factors.
David A. Stroud, Elliot E. Surgenor, Luke E. Formosa et al.
 
 
 
AGRICULTURAL GENOMICS 2016 — FROM VARIATION TO IMPROVED PRODUCTION

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Careers & Jobs
 
Feature  
 
 
 
Job applications: Under the covers
Lesley Evans Ogden
Column  
 
 
 
A better letter
Ingrid Eisenstadter
Career Briefs  
 
 
 
Grant awards: Diversity boost
Networking: Match.com for mentors
Futures  
 
 
Simple things
A question of survival.
Rebecca Birch
 
 
 
 
 

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