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  journal cover  
Nature Volume 529 Issue 7584
 
This Week  
 
 
Editorials  
 
 
 
Come together
Cross-continent collaboration in the sciences has become the norm. We must ensure that disadvantaged regions are not left out.
 

Brain disorders across the lifespan

This supplement outlines the overarching and intersecting priorities for addressing causes, prevention, treatment and rehabilitation, as well as best practices to promote global nervous-system health. Available free online.

Financial support for publication has been provided by the Fogarty International Center
World View  
 
 
 
Constructive engagement is the key to climate action
This year, scientists should resolve to follow the lead of Pope Francis and seek an inclusive approach to climate change, says Daniel Sarewitz.
 
Seven Days  
 
 
 
The week in science
Volkswagen sued; Nobel laureate Alfred Gilman dies; and Guinea now free of Ebola.
 
 

Infectious disease control and elimination

The Diagnostics Modelling Consortium was established in 2013 to facilitate the integration of diagnostic data into models of disease transmission dynamics. In this supplement, the Consortium and its partners report on the latest research outcomes across several major diseases.

Available free online.

Financial support for publication has been provided by the Bill & Melinda Gates Foundation
 
 
News in Focus
 
China embraces precision medicine on a massive scale
Strong genomics record bodes well but a shortage of doctors could pose a hurdle.
  Dogs thwart effort to eradicate Guinea worm
Epidemic in dogs complicates push to wipe out parasite.
Ewen Callaway
Antarctic clouds studied for first time in five decades
AWARE project will help unravel effects of global warming.
Alexandra Witze
  Dutch lead European push to flip journals to open access
Academic consortia urge faster changes in scholarly publishing.
Declan Butler
The science to look out for in 2016
Space missions, carbon capture and gravitational waves are set to shape the year.
Elizabeth Gibney
 
Features  
 
 
 
The physics of life
From flocking birds to swarming molecules, physicists are seeking to understand 'active matter' — and looking for a fundamental theory of the living world.
Gabriel Popkin
Multimedia  
 
 
Podcast: 07 January 2016
This week, science predictions for 2016, the effect of extreme weather on crops, and a new phase of hydrogen for the new year.
 
 
Comment
 
Renewables: Share data on wind energy
Giving researchers access to information on turbine performance would allow wind farms to be optimized through data mining, says Andrew Kusiak.
Andrew Kusiak
Books and Arts  
 
 
 
Listings: Science in culture 2016
Gear up for some big birthdays, as anniversaries roll around for Star Trek, H. G. Wells and the US National Park Service. And jostling for the spotlight are Finding Nemo's fishy crew, a modern twist on haute couture, groundbreaking artists, ground-quaking dinosaurs and (perhaps) Keanu Reeves. Daniel Cressey reports.
Daniel Cressey
Correspondence  
 
 
 
Migrant workers: China boom leaves children behind
Peng Yuan, Long Wang
  Water treatment: Recover wastewater resources locally
Zhiyong Jason Ren, Art K. Umble
Antibodies: Half of samples fail protein-blot tests
Matt Landry, Aldrin V. Gomes
  Climate mitigation: UK budget cuts erode Paris promises
Alexander C. Lees, Andrew Balmford, Ben Phalan
Collaboration: Come together to study life's origins
Caleb Scharf, Nathaniel Virgo, H. James Cleaves
 
 
 
Specials
 
TOOLBOX  
 
 
 
The unsung heroes of scientific software
Creators of computer programs that underpin experiments don’t always get their due — so the website Depsy is trying to track the impact of research code.
Dalmeet Singh Chawla
 
 
Research
 
NEW ONLINE  
 
 
 
Cancer: Bet on drug resistance
Inhibitors of the BET bromodomain proteins are promising cancer therapeutics, but tumour cells are likely to become resistant to these drugs. Anticipated mechanisms of resistance have now been described.
Vascular biology: Transcriptional control of endothelial energy
The formation of blood vessels requires rapid proliferation of endothelial cells. The transcription factors FOXO1 and MYC have been found to regulate the metabolism and proliferation of vascular endothelial cells.
The functional diversity of retinal ganglion cells in the mouse
Two-photon calcium imaging reveals that the mouse retina contains more than 30 functionally distinct retinal ganglion cells, including some that have not been described before, exceeding current estimates and suggesting that the functional diversity of retinal ganglion cells may be much larger than previously thought.
An ID2-dependent mechanism for VHL inactivation in cancer
HIFα transcription factors are highly expressed in cancer stem cells from glioma; DYRK1 kinases inhibit the protein ID2 to modulate the level of HIF2α and the tumorigenic properties of glioblastoma-associated cancer stem cells.
High-fidelity CRISPR–Cas9 nucleases with no detectable genome-wide off-target effects
A high-fidelity variant of Streptococcus pyogenes CRISPR–Cas9 is reported that lacks detectable off-target events as assessed by genome-wide break capture and targeted sequencing methods.
Weakened magnetic braking as the origin of anomalously rapid rotation in old field stars
The age of a young to middle-aged star can be determined from how quickly or slowly it rotates, but the relationship breaks down for old stars; models now show that old stars are rotating much more quickly than expected, perhaps because magnetic winds are weaker and therefore brake the rotation less effectively.
A prevalence of dynamo-generated magnetic fields in the cores of intermediate-mass stars
Suppression of dipolar oscillation modes by strong magnetic fields in the cores of intermediate-mass red giant stars reveals that powerful magnetic dynamos were very common in the previously convective cores of these stars.
Crystal structure of a DNA catalyst
Both DNA and RNA molecules have been shown to exhibit catalytic activity, but only the structure of catalytic RNAs has previously been determined; here the structure of an RNA-ligating DNA in the post-catalytic state is solved.
FOXO1 couples metabolic activity and growth state in the vascular endothelium
The transcription factor FOXO1 is identified as a crucial checkpoint of vascular growth, coupling the metabolic and proliferative activities of endothelial cells.
Response and resistance to BET bromodomain inhibitors in triple-negative breast cancer
BET inhibitors that target bromodomain chromatin readers such as BRD4 are being explored as potential therapeutics in cancer; here triple-negative breast cancer cell lines are shown to respond to BET inhibitors and resistance seems to be associated with transcriptional changes rather than drug efflux and mutations, opening potential avenues to improve clinical responses to BET inhibitors.
News and Views  
 
 
 
Astrophysics: Why black holes pulse brightly
Poshak Gandhi
Ecology: Different worlds
Gregory P. Dietl
Virology: Host protein clips bird flu's wings in mammals
Anice C. Lowen
 

Nature Index 2015 China

The 2015 Nature Index supplement dedicated to China reveals the country's output of high quality science continues to grow — a trend that shows no signs of slowing.

Access now for free.
Archaeology: Sources of Chaco wood
Jared Diamond
 
Cosmology: Rare isotopic insight into the Universe
Nikos Prantzos
50 & 100 Years Ago
 
Cancer: Oncogene brought into the loop
Matthew R. Grimmer, Joseph F. Costello
Articles  
 
 
 
Autophagy maintains stemness by preventing senescence
The regenerative properties of muscle stem cells decline with age as the stem cells enter an irreversible state of senescence; a study of mouse muscle stem cells reveals that entry into senescence is an autophagy-dependent process and promoting autophagy in old satellite cells can reverse senescence and restore their regenerative properties in an injury model.
Laura García-Prat, Marta Martínez-Vicente, Eusebio Perdiguero et al.
Substantial contribution of extrinsic risk factors to cancer development
Recent analyses have suggested that the intrinsic behaviour of tissue stem cells may be responsible for malignant transformation and cancer progression, raising questions regarding the influence of extrinsic factors on tumourigenesis; here, both data-driven and model-driven evidence show that such intrinsic risk factors contribute only marginally to cancer development, indicating that cancer risk is heavily influenced by extrinsic factors.
Song Wu, Scott Powers, Wei Zhu et al.
SMN and symmetric arginine dimethylation of RNA polymerase II C-terminal domain control termination
Symmetric dimethylation of the human RNA polymerase II C-terminal domain residue R1810 by the protein arginine methyltransferase 5 (PRMT5) directly recruits the protein survival of motor neuron (SMN) and indirectly recruits the helicase senataxin to resolve R-loops and promote transcription termination.
Dorothy Yanling Zhao, Gerald Gish, Ulrich Braunschweig et al.
Letters  
 
 
 
Repetitive patterns in rapid optical variations in the nearby black-hole binary V404 Cygni
Observations of V404 Cygni, an X-ray transient containing a black hole of nine solar masses and a companion star, show that optical oscillations on timescales of 100 seconds to 2.5 hours can occur at mass-accretion rates at least ten times lower than previously thought, suggesting that the accretion rate is not the critical parameter for inducing inner-disk instabilities.
Mariko Kimura, Keisuke Isogai, Taichi Kato et al.
Four-electron deoxygenative reductive coupling of carbon monoxide at a single metal site
The environmental and geopolitical problems associated with fossil fuels might be alleviated if it were possible to produce synthetic multicarbon fuels efficiently from single-carbon feedstocks; here, a molybdenum compound supported by a terphenyl–diphosphine ligand is used to convert carbon monoxide into a metal-free C2O1 fragment, with the ligand both serving as an electron reservoir and stabilizing the different intermediate species.
Joshua A. Buss, Theodor Agapie
A continuum from clear to cloudy hot-Jupiter exoplanets without primordial water depletion
A spectroscopic comparison of ten hot-Jupiter exoplanets reveals that the difference between the planetary radius measured at optical and infrared wavelengths allows atmosphere types ranging from clear to cloudy to be distinguished; the difference in radius at a given wavelength correlates with the spectral strength of water at that wavelength, suggesting that haze obscures the signal from water.
David K. Sing, Jonathan J. Fortney, Nikolay Nikolov et al.
Evidence for a new phase of dense hydrogen above 325 gigapascals
Raman spectroscopy of three isotopes of hydrogen under very high compression yields evidence of a new phase of hydrogen—phase V—which could potentially be a precursor to the long-sought non-molecular phase.
Philip Dalladay-Simpson, Ross T. Howie, Eugene Gregoryanz
Partially oxidized atomic cobalt layers for carbon dioxide electroreduction to liquid fuel
Electroreduction of carbon dioxide into useful fuels helps to reduce fossil-fuel consumption and carbon dioxide emissions, but activating carbon dioxide requires impractically high overpotentials; here a metal atomic layer combined with its native oxide that requires low overpotentials to reduce carbon dioxide is developed, adapted from an existing cobalt-based catalyst.
Shan Gao, Yue Lin, Xingchen Jiao et al.
Slab melting as a barrier to deep carbon subduction
Experiments show that carbonated oceanic crust subducting into the mantle will intersect the melting curve at depths of about 300 to 700 kilometres, creating a barrier to direct carbonate recycling into the deep mantle.
Andrew R. Thomson, Michael J. Walter, Simon C. Kohn et al.
Holocene shifts in the assembly of plant and animal communities implicate human impacts
Plant and animal assemblage co-occurrence patterns have remained relatively consistent for 300 million years but have changed over the Holocene epoch as the impact of humans has dramatically increased.
S. Kathleen Lyons, Kathryn L. Amatangelo, Anna K. Behrensmeyer et al.
Influence of extreme weather disasters on global crop production
Analyses of the effects of extreme weather disasters on global crop production over the past five decades show that drought and extreme heat reduced national cereal production by 9–10%, whereas no discernible effect at the national level was seen for floods and extreme cold; droughts affect yields and the harvested area, whereas extreme heat mainly affects yields.
Corey Lesk, Pedram Rowhani, Navin Ramankutty
The calcium sensor synaptotagmin 7 is required for synaptic facilitation
Synaptotagmin 7 is shown to be essential for synaptic facilitation at a variety of central synapses, and the results pave the way for future functional studies of short-term synaptic plasticity, a fundamental form of neuronal computation.
Skyler L. Jackman, Josef Turecek, Justine E. Belinsky et al.
The C. elegans adult neuronal IIS/FOXO transcriptome reveals adult phenotype regulators
The FOXO transcription factor, DAF-16, is required for the long-life phenotype of daf-2 mutant nematode worms; here the authors find that daf-2 mutant worms maintain neuronal functions and behaviours with age by using a set of transcriptional targets that are distinct from previously identified canonical FOXO/DAF-16-regulated targets.
Rachel Kaletsky, Vanisha Lakhina, Rachel Arey et al.
Targeting PTPRK-RSPO3 colon tumours promotes differentiation and loss of stem-cell function
Antibody-mediated inhibition of R-spondin-3 in colorectal tumours decreases tumour growth and promotes differentiation—these effects are associated with a decrease in expression of genes associated with stem-cell function.
Elaine E. Storm, Steffen Durinck, Felipe de Sousa e Melo et al.
Species difference in ANP32A underlies influenza A virus polymerase host restriction
The host protein ANP32A is shown here to be a species barrier to the function of avian influenza virus polymerase in mammalian cells; the mutation E627K in viral protein PB2, which allows mammalian ANP32 family proteins to support the avian virus polymerase, is known to be associated with increased virulence of avian viruses in mammals.
Jason S. Long, Efstathios S. Giotis, Olivier Moncorgé et al.
A LAIR1 insertion generates broadly reactive antibodies against malaria variant antigens
Monoclonal antibodies with broad reactivity against antigens on the parasite that causes malaria, Plasmodium falciparum, are isolated from two subjects and are found to have an unusual insertion of an immunoglobulin-like domain from a different chromosome, illustrating a new mechanism of antibody diversification.
Joshua Tan, Kathrin Pieper, Luca Piccoli et al.
Insulator dysfunction and oncogene activation in IDH mutant gliomas
An epigenetic mechanism in which gain-of-function IDH mutations promote gliomagenesis by disrupting chromosomal topology is presented, with IDH mutations causing the binding sites of the methylation-sensitive insulator CTCF to become hypermethylated; disruption of a CTCF boundary near the glioma oncogene PDGFRA allows a constitutive enhancer to contact and activate the oncogene aberrantly.
William A. Flavahan, Yotam Drier, Brian B. Liau et al.
 
 

CHRONIC MYELOGENOUS LEUKEMIA

This focus collection brings to the fore a number of Leukemia articles which highlight new developments in our understanding and management of persons with CML. 

Available free online.
 
 
Careers & Jobs
 
Feature  
 
 
 
Data sharing: An open mind on open data
Virginia Gewin
Q&AS  
 
 
 
Turning point: Andrew Simons
Virginia Gewin
Futures  
 
 
Ghosts in the machine
Cheque mate.
Aaron Moskalik
 
 
 
 
 

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