| | Volume 510 Number 7506 | | | nature | | The science that matters. Every week. | | | | | | | |  | | AIMResearch - Highlighting research from the Advanced Institute for Materials Research (AIMR) in Japan, which promotes mathematics-materials science collaboration Latest highlights: Oxide interfaces: Blueprint for a super-material In the spotlight: Exporting mathematics-materials collaboration research to the world Register today for monthly email alerts from the AIMR! | | | | | | | Jump to the content that matters to you | | | | | | | | Specials - Outlook: Stroke | | | | This issue of Nature features an Outlook supplement on stroke, a condition that kills millions each year and leaves many more permanently disabled. We cover the latest research and clinical advances, including work on repairing the brain after a stoke in order to help survivors put their lives back together. ▼ more | | | | | | | | | A zero-knowledge protocol for nuclear warhead verification | Future rounds of nuclear arms control will ideally involve direct inspection of nuclear warheads, but this process requires procedures that give inspectors high confidence about the authenticity of submitted nuclear items yet give no information about their design. Neutron radiographic images of warheads would contain highly classified information, but in this new protocol, data are not processed in the normal way but are recorded using detectors preloaded with a 'negative' of the radiograph of the target device. The resulting comparison provides differential measurements of neutron transmission and emission that can detect small diversions of heavy metal from a representative test object. | | | | | | | | | Aspergillomarasmine A overcomes metallo-β-lactamase antibiotic resistance | Infection with Gram negative pathogens bearing metallo-β-lactamases such as NDM-1 and VIM is a growing public health problem that threatens the clinical future of penicillin, cephalosporin and carbapenem antibiotics . Now Gerard Wright and colleagues report that aspergillomarasmine A, a natural product from the fungus Aspergillus versicolor, is a rapid and potent inhibitor of both NDM-1 and VIM-2, and find that it fully restores antibiotic efficacy against bacteria possessing VIM or NDM-type resistance genes. The compound is non-toxic and well tolerated, making it a realistic prospect as an antibiotic booster. | | | | | | | | |  | | TAP INTO EXPERIENCED GENOMIC KNOW-HOW WITH EA | QUINTILES WEBINARS. From RNA sequencing to variant detection, disease biology to targeted therapeutic development, the Genomic Know-How Webinar Series leverages over 500 collective years of genomic experience to give you the insight you need to succeed. | | | | | | | | | | | South Greenland ice-sheet collapse during Marine Isotope Stage 11 | There is little geological evidence from which to determine the magnitude of the retreat of the Greenland ice sheet during past interglaciations, which in turn limits our ability to estimate its future contributions to sea level rise in a warming world. Alberto Reyes et al. now provide isotopic evidence from an ocean sediment core from the nearby Labrador Sea that suggests that the bulk of the southern Greenland ice sheet collapsed during the Marine Isotope Stage 11 'super- interglacial' about 400,000 years ago. The authors comment that this ice-sheet collapse occurred in response to climate conditions that are within the range of those anticipated by the end of the twenty-first century. | | | | | | | | | | | | | | | | | In this week's podcast: checking up on nuclear weapons, scientists mixing research and romance, and a new solar cell technology. In our latest video feature, how can we maintain resources for future generations? Harvard scientists devised a game to test whether individuals would cooperate with future 'generations' of players. | | | | | | | | | | | | | | | | | | | | | | | | Biosafety in the balance ▶ | | | An accident with anthrax demonstrates that pathogen research always carries a risk of release — and highlights the need for rigorous scrutiny of gain-of-function flu studies. | | | | | | | | Metrics market ▶ | | | Measures of research impact are improving, but universities should be wary of their limits. | | | | | | | | Storm warning ▶ | | | Environmentalists are divided over whether it is possible to have a ‘good’ Anthropocene. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Love in the lab: Close collaborators ▶ | | | Romance often sparks between colleagues, and scientists are no different. Nature profiles four super-couples who have combined love and the lab. | | | | | | | | Nutrition: Vitamins on trial ▶ | | | After decades of study, researchers still can't agree on whether nutritional supplements actually improve health. | | | | | | | | | | | | | | | | | | | | | | | | | | Space science: Lunar star ▶ | | | Roger D. Launius is perplexed by a biography of Neil Armstrong that profiles the missions, not the man. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma ▶ | | | Paul A. Northcott, Catherine Lee, Thomas Zichner et al. | | | Focusing on two ill-characterized subtypes of medulloblastoma (group 3 and group 4), this study identifies prevalent genomic structural variants that are restricted to these two subtypes and independently bring together coding regions of GFI1 family proto-oncogenes with active enhancer elements, leading to their mutually exclusive oncogenic activation. | | | | | | | | The cancer glycocalyx mechanically primes integrin-mediated growth and survival ▶ | | | Matthew J. Paszek, Christopher C. DuFort, Olivier Rossier et al. | | | Metastatic cancer cells are shown to have a tendency towards forming a bulky glycocalyx owing to the production of large glycoproteins, and this cancer-associated glycocalyx has a mechanical effect on the spatial organization of integrins — by funnelling integrins into adhesions, integrin clustering and signalling is promoted, which leads to enhanced cell survival and proliferation. | | | | | | | | NMDA receptor structures reveal subunit arrangement and pore architecture ▶ | | | Chia-Hsueh Lee, Wei Lü, Jennifer Carlisle Michel et al. | | | X-ray crystal structures are presented of the N-methyl-d-aspartate (NMDA) receptor, a calcium-permeable ion channel that opens upon binding of glutamate and glycine; glutamate is a key excitatory neurotransmitter and enhanced structural insight of this receptor may aid development of therapeutic small molecules. | | | | | | | | | | | | | | | | | | | | Neuropathy of haematopoietic stem cell niche is essential for myeloproliferative neoplasms ▶ | | | Lorena Arranz, Abel Sánchez-Aguilera, Daniel Martín-Pérez et al. | | | Myeloproliferative neoplasms are caused by mutations in the haematopoietic stem cell (HSC) compartment, and here the authors show that the HSC niche contributes to the pathogenesis; sympathetic innervation of mesenchymal stem cells (MSCs) is reduced in the bone marrow of patients, which leads to reduced MSC numbers and increased mutant HSC expansion, and restoring sympathetic regulation of MSCs with neuroprotective/sympathomimetic drugs prevents mutant HSC expansion. | | | | | | | | A vaccine targeting mutant IDH1 induces antitumour immunity ▶ | | | Theresa Schumacher, Lukas Bunse, Stefan Pusch et al. | | | The mutant IDH1 protein, which is expressed in a large fraction of human gliomas, is shown to be immunogenic; mutant-specific immune responses can be detected in patients with IDH1 mutated gliomas and generated in mice and are shown to treat established IDH1 mutant tumours in a syngeneic MHC humanized mouse model in a CD4 T-cell-dependent manner. | | | | | | | | | | | | | | Optimization of lag time underlies antibiotic tolerance in evolved bacterial populations ▶ | | | Ofer Fridman, Amir Goldberg, Irine Ronin et al. | | | Repeated exposure of the bacterium Escherichia coli to clinically relevant concentrations of ampicillin results in the evolution of tolerance—the ability to survive until the antibiotic concentration diminishes—through an extension of the lag phase, a finding that has implications for slowing the evolution of antibiotic resistance. | | | | | | | | | | | Cooperating with the future ▶ | | | Oliver P. Hauser, David G. Rand, Alexander Peysakhovich et al. | | | An intergenerational cooperation game has been developed to study decision-making regarding resource use: when decisions about resource extraction were made individually the resource was rapidly depleted by a minority of defectors; the resource was sustainably maintained across generations, however, when decisions were made democratically by voting. | | | | | | | | | | | Aspergillomarasmine A overcomes metallo-β-lactamase antibiotic resistance ▶ | | | Andrew M. King, Sarah A. Reid-Yu, Wenliang Wang et al. | | | The emergence of Gram-negative pathogens resistant to carbapenem antibiotics is a global health concern and carbapenem resistance often arises through acquisition of β-lactamase enzymes; this study identifies the natural fungal product aspergillomarasmine A as a metallo-β-lactamase inhibitor and a potential treatment to tackle carbapenem resistance. | | | | | | | | | | | Structure of a modular polyketide synthase ▶ | | | Somnath Dutta, Jonathan R. Whicher, Douglas A. Hansen et al. | | | Polyketide synthases are multidomain enzymes that produce polyketides, which form the basis of many therapeutic agents; here, electron cryo-microscopy is used to establish the structure of a bacterial full-length module, and to elucidate the structural basis of both intramodule and intermodule substrate transfer. | | | | | | | | Purkinje-cell plasticity and cerebellar motor learning are graded by complex-spike duration ▶ | | | Yan Yang, Stephen G. Lisberger | | | Recordings from monkeys during motor learning suggest that durations of complex-spike (CS) responses to climbing-fibre inputs are meaningful signals correlated across the Purkinje-cell population during motor learning; longer climbing-fibre bursts lead to longer-duration CS responses, larger synaptic depression and stronger learning, thus forming a graded instruction. | | | | | | | | | | | Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing ▶ | | | Volker Hovestadt, David T. W. Jones, Simone Picelli et al. | | | Medulloblastoma is a malignant childhood brain tumour presenting major clinical challenges; here, a comprehensive genome-wide DNA methylation data set from human and mouse tumours, coupled with analysis of histone modifications, RNA transcripts and genome sequencing, uncovers a wealth of alterations that provide insights into the epigenetic regulation of transcription and genome organization in medulloblastoma pathogenesis. | | | | | | | | | | | | | | Structure of a lipid-bound extended synaptotagmin indicates a role in lipid transfer ▶ | | | Curtis M. Schauder, Xudong Wu, Yasunori Saheki et al. | | | Several proteins localized at membrane contact sites contain an SMP domain, which has been proposed to act as a lipid-binding module; here, the crystal structure of a fragment of the extended synaptotagmin 2 protein, including its SMP, is presented, and indicates that this protein may have a direct role in lipid transport. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Nature Outlook Cancer Cancer kills millions of people across the globe every year. But the development of targeted medicines, novel drug delivery technologies and clinical research data offer a glimpse towards a cancer-free future. Access the Outlook free online for six months. Produced with support from Celgene Corporation. | | | | | | | | | | | | | | | | | | | | | | | | | | | | Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma ▶ | | | Paul A. Northcott, Catherine Lee, Thomas Zichner et al. | | | Focusing on two ill-characterized subtypes of medulloblastoma (group 3 and group 4), this study identifies prevalent genomic structural variants that are restricted to these two subtypes and independently bring together coding regions of GFI1 family proto-oncogenes with active enhancer elements, leading to their mutually exclusive oncogenic activation. | | | | | | | | The cancer glycocalyx mechanically primes integrin-mediated growth and survival ▶ | | | Matthew J. Paszek, Christopher C. DuFort, Olivier Rossier et al. | | | Metastatic cancer cells are shown to have a tendency towards forming a bulky glycocalyx owing to the production of large glycoproteins, and this cancer-associated glycocalyx has a mechanical effect on the spatial organization of integrins — by funnelling integrins into adhesions, integrin clustering and signalling is promoted, which leads to enhanced cell survival and proliferation. | | | | | | | | | | | | | | Neuropathy of haematopoietic stem cell niche is essential for myeloproliferative neoplasms ▶ | | | Lorena Arranz, Abel Sánchez-Aguilera, Daniel Martín-Pérez et al. | | | Myeloproliferative neoplasms are caused by mutations in the haematopoietic stem cell (HSC) compartment, and here the authors show that the HSC niche contributes to the pathogenesis; sympathetic innervation of mesenchymal stem cells (MSCs) is reduced in the bone marrow of patients, which leads to reduced MSC numbers and increased mutant HSC expansion, and restoring sympathetic regulation of MSCs with neuroprotective/sympathomimetic drugs prevents mutant HSC expansion. | | | | | | | | A vaccine targeting mutant IDH1 induces antitumour immunity ▶ | | | Theresa Schumacher, Lukas Bunse, Stefan Pusch et al. | | | The mutant IDH1 protein, which is expressed in a large fraction of human gliomas, is shown to be immunogenic; mutant-specific immune responses can be detected in patients with IDH1 mutated gliomas and generated in mice and are shown to treat established IDH1 mutant tumours in a syngeneic MHC humanized mouse model in a CD4 T-cell-dependent manner. | | | | | | | | | | | | | | | | | Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing ▶ | | | Volker Hovestadt, David T. W. Jones, Simone Picelli et al. | | | Medulloblastoma is a malignant childhood brain tumour presenting major clinical challenges; here, a comprehensive genome-wide DNA methylation data set from human and mouse tumours, coupled with analysis of histone modifications, RNA transcripts and genome sequencing, uncovers a wealth of alterations that provide insights into the epigenetic regulation of transcription and genome organization in medulloblastoma pathogenesis. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | A zero-knowledge protocol for nuclear warhead verification ▶ | | | Alexander Glaser, Boaz Barak, Robert J. Goldston | | | Future rounds of nuclear arms control would ideally involve direct inspection of nuclear warheads using procedures that give inspectors high confidence about the authenticity of submitted nuclear items yet give no information about their design; this is now shown to be achievable using zero-knowledge protocols in neutron imaging of nuclear warheads. | | | | | | | | Precision measurement of the Newtonian gravitational constant using cold atoms ▶ | | | G. Rosi, F. Sorrentino, L. Cacciapuoti et al. | | | Determination of the gravitational constant G using laser-cooled atoms and quantum interferometry, a technique that gives new insight into the systematic errors that have proved elusive in previous experiments, yields a value that has a relative uncertainty of 150 parts per million and which differs from the current recommended value by 1.5 combined standard deviations. | | | | | | | | | | | | | | An overview of N-heterocyclic carbenes ▶ | | | Matthew N. Hopkinson, Christian Richter, Michael Schedler et al. | | | N-heterocyclic carbenes are powerful tools in organic chemistry, with many commercially important applications; this overview describes their properties and potential uses. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Cooperating with the future ▶ | | | Oliver P. Hauser, David G. Rand, Alexander Peysakhovich et al. | | | An intergenerational cooperation game has been developed to study decision-making regarding resource use: when decisions about resource extraction were made individually the resource was rapidly depleted by a minority of defectors; the resource was sustainably maintained across generations, however, when decisions were made democratically by voting. | | | | | | | | | | | South Greenland ice-sheet collapse during Marine Isotope Stage 11 ▶ | | | Alberto V. Reyes, Anders E. Carlson, Brian L. Beard et al. | | | The isotopic composition of glacial sediment discharged into the ocean from south Greenland is used to identify a major reduction in the amount of that sediment derived from erosion of Greenland’s Precambrian bedrock, probably indicating the cessation of subglacial erosion and sediment transport during Marine Isotope Stage 11 as a result of the almost complete deglaciation of south Greenland. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Statistics: A growing global burden ▶ | | | Stroke is a public-health problem that tends to affect poorer countries more and leaves richer countries with ballooning medical costs. Yet it is often preventable. By Zoë Corbyn. | | | | | | | | | | | | | | Drug delivery: Brain food ▶ | | | The key to stroke recovery is to coax the brain cells to heal without creating more damage in the process. A clever delivery system may just do the trick. | | | | | | | | | | | Mental health: Ups and downs ▶ | | | Strokes can shatter a person's identity and make it difficult to find the light. But there are ways to help patients cope. | | | | | | | | | | | | | | | | | | In this special focus issue, cutting-edge investigators from around the world highlight the important challenges and progress in epilepsy research and clinical practice. Produced with financial support from UCB | | | | | | | | | | | | | | | | Symposia: Behind the scenes ▶ | | | Early-career researchers who help to organize conferences develop crucial skills that go beyond just booking speakers. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Careers related news & comment | | | | | | | | | | | | | | | |  naturejobs.com Science jobs of the week | | | | | | | | | | | | | | | No matter what your career stage, student, postdoc or senior scientist, you will find articles on naturejobs.com to help guide you in your science career. Keep up-to-date with the latest sector trends, vote in our reader poll and sign-up to receive the monthly Naturejobs newsletter. | | | | | | | • natureevents Directory featured events | | | | | |  natureevents directory featured events | | | | | | | Natureevents Directory is the premier resource for scientists looking for the latest scientific conferences, courses, meetings and symposia. 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