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Nature contents_ 16 June 2011
[2011-06-16]
 
   
  Volume 474 Number 7351   
 

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The science that matters. Every week.

 
     
 
 
 
 
 
   
 
 

RIKEN RESEARCH - The latest in news and research from RIKEN, Japan's flagship research organization

Research highlights: The importance of fundamental measurements | How plants self heal | Tiny probes for living cells
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 News & Comment    Biological Sciences    Chemical Sciences
 
 Physical Sciences    Earth & Environmental Sciences    Careers & Jobs
 
 
 

This week's highlights

 
 

Biological Sciences

More Biological sciences
 
A conditional knockout resource for the genome-wide study of mouse gene function
 

Knockout mice in which a specific gene is inactivated are central to the analysis of gene function and now a new resource that has already produced thousands of conditional mutations in the C57BL/6 embryonic stem cells is available for the creation of mutant mice for large-scale phenotyping programmes.

 
 
 

Physical Sciences

More Physical sciences
 
Zero outward flow velocity for plasma in a heliosheath transition layer
 

Voyager 1, launched in September 1977, has almost left the Solar System behind. But not quite, as these latest messages from the distant probe demonstrate.

 
 
 

Biological Sciences

More Biological sciences
 
Transcriptomic analysis of autistic brain reveals convergent molecular pathology
 

Are there many different pathologies presenting as autistic spectrum disorder (ASD), or do the myriad genetic causes converge on a few biological pathways affected in most individuals, which could be therapeutically targeted? A transcriptome and gene co-expression network analysis suggests that the latter, convergent model, is the case.

 
 
 
 
 
 
 
   
 
 

Liquidator 96 - The Manual Multi-Task Master
Rainin's manual 96-well benchtop liquid handling system delivers precise, accurate and reproducible results well-to-well, plate-to-plate. The Liquidator 96 offers flexibility and high-throughput for genomics, proteomics and cellular assay applications. Fill or transfer between 96 and 384-well plates. Learn more at www.mt.com/liq96

 
 
 
 
 
 
 
 

Podcast & Video

 
 

In this week's podcast: cyber warfare, species xenophobia and the chemistry of water. Plus, the best of the rest from this week's Nature.

 
 
 

Specials - Insight: Intestinal networks in health and disease

 
 

Four reviews in this issue focus on the dual role of the digestive tract, as the supplier of nutrients and as a barrier against the outside world.

more

 
 
 
 
News & Comment Read daily news coverage top
 
 
 
 
 
 

THIS WEEK

 
 
 
 
 

Editorials

 
     
 
 
 
 
 

Contaminated food for thought ▶

 
 

If it is to deal effectively with outbreaks of infectious diseases, Germany must streamline its convoluted systems for reporting and communication.

 
 
 
 
 
 

Full transparency ▶

 
 

Nations should release global nuclear-monitoring data to academics and the public.

 
 
 
 
 
 

Great ape debate ▶

 
 

Researchers should contribute to a US analysis of the case for chimpanzee research.

 
 
 
 
 
 

World View

 
     
 
 
 
 
 

Poison in party pills is too much to swallow ▶

 
 

The harm caused by designer drugs justifies the law's attempts to keep pace with underground chemists, says Mike Cole.

 
 
 
 
 
 

Seven Days

 
     
 
 
 
 
 

Seven days: 10-16 June 2011 ▶

 
 

The week in science

 
 
 
 
 

NEWS IN FOCUS

 
 
 
 
 

Studies spy on a river's rage ▶

 
 

Investigation into this year's Mississippi floods could shape coastal restoration plans.

 
 
 
 
 
 

Life hackers seek new tools ▶

 
 

Field aims to enlist techniques from molecular biology to attack fundamental challenges.

 
 
 
 
 
 

Mouse library set to be knockout ▶

 
 

Global effort to disable every mouse gene nears completion.

 
 
 
 
 
 

Species spellchecker fixes plant glitches ▶

 
 

Online tool should weed out misspellings and duplications.

 
 
 
 
 
 

Europe tackles huge fraud ▶

 
 

Regulators scramble to recover millions of euros awarded to fake research projects.

 
 
 
 
 
 

Egypt invests in its science ▶

 
 

Latest budget establishes research as a national priority.

 
 
 
 
 
 

Features

 
     
 
 
 
 
 

Animal rights: Chimpanzee research on trial ▶

 
 

As pressure from activists builds, the United States is considering whether it should end invasive experiments in chimpanzees.

 
 
 
 
 
 

Physics of life: The dawn of quantum biology ▶

 
 

The key to practical quantum computing and high-efficiency solar cells may lie in the messy green world outside the physics lab.

 
 
 
 
 

COMMENT

 
 
 
 
 

Buried by bad decisions ▶

 
 

Our brains are hard-wired to make poor choices about harm prevention in today's world. But we can fight it, says Daniel Gilbert.

 
 
 
 
 
 

Democratizing clinical research ▶

 
 

Keith Lloyd and Jo White commend a way for patients, clinicians and scientists to set priorities jointly.

 
 
 
 
 
 

Books and Arts

 
     
 
 
 
 
 

Virology: Potent tiny packages ▶

 
 

Carl Zimmer's primer on viruses entertains, but reveals little about their basic traits, says Robin Weiss.

 
 
 
 
 
 

Techniques: Records in the field ▶

 
 

Good notebook skills are vital for documenting observations of the natural world, finds Sandra Knapp.

 
 
 
 
 
 

Books in brief ▶

 
 
 
 
 
 

Q&A: The adaptive lyricist ▶

 
 

Baba Brinkman is a Canadian rap artist whose award-winning show The Rap Guide to Evolution wowed UK crowds at the Edinburgh Fringe Festival during Charles Darwin's bicentenary year. As the show opens next week for a long summer run off Broadway in New York, Brinkman discusses rhyme, improvisation and scientific certainty.

 
 
 
 
 
 

Correspondence

 
     
 
 
 
 
 

Extinctions: conserve not collate Megan Evans, Hugh Possingham & Kerrie Wilson | Extinctions: consider all species T. M. Brooks | Making society more resilient Akira S. Mori | Population decline is a long way off Robert Wyman | Brazilian soya: the argument for Rachael Garrett | Brazilian soya: the argument against Brenda Baletti | Peer reviews: some are already public Bernd Pulverer | Change Chinese returnee rules Jun Li | Worm scientist's identity revealed Mark J. F. Brown

 
 
 
 
 
 
Specials - Insight: Intestinal Networks in Health and Disease top
 
 
 
 
 
 
 

Intestinal networks in health and disease ▶

 
 
 
 
 
 

Intestinal homeostasis and its breakdown in inflammatory bowel disease ▶

 
 
 
 
 
 

Genetics and pathogenesis of inflammatory bowel disease ▶

 
 
 
 
 
 

Microenvironmental regulation of stem cells in intestinal homeostasis and cancer ▶

 
 
 
 
 
 

Human nutrition, the gut microbiome and the immune system ▶

 
 
 
 
 
 
 
 
 
 
 
   
 
 
 
 
 
 
Biological Sciences top
 
 
 
 
 
 

RESEARCH

 
 
 
 
 

Latest Online

 
     
 
 
 
 
 

NMDA receptor blockade at rest triggers rapid behavioural antidepressant responses ▶

 
 

Anita E. Autry, Megumi Adachi, Elena Nosyreva, Elisa S. Na, Maarten F. Los et al.

 
 

Clinical studies consistently demonstrate that a single sub-psychomimetic dose o...

 
 
 
 
 
 

Structure-based design of non-natural amino-acid inhibitors of amyloid fibril formation ▶

 
 

Stuart A. Sievers, John Karanicolas, Howard W. Chang, Anni Zhao, Lin Jiang et al.

 
 

Many globular and natively disordered proteins can convert into amyloid fibrils....

 
 
 
 
 
 

Subunit arrangement and phenylethanolamine binding in GluN1/GluN2B NMDA receptors ▶

 
 

Erkan Karakas, Noriko Simorowski & Hiro Furukawa

 
 

Since it was discovered that the anti-hypertensive agent ifenprodil has neuropro...

 
 
 
 
 
 

Structural basis of steroid hormone perception by the receptor kinase BRI1 ▶

 
 

Michael Hothorn, Youssef Belkhadir, Marlene Dreux, Tsegaye Dabi, Joseph. P. Noel et al.

 
 

Polyhydroxylated steroids are regulators of body shape and size in higher organi...

 
 
 
 
 
 

Structural insight into brassinosteroid perception by BRI1 ▶

 
 

Ji She, Zhifu Han, Tae-Wuk Kim, Jinjing Wang, Wei Cheng et al.

 
 

Brassinosteroids are essential phytohormones that have crucial roles in plant gr...

 
 
 
 
 
 

Articles and Letters

 
     
 
 
 
 
 

A conditional knockout resource for the genome-wide study of mouse gene function ▶

 
 

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell et al.

 
 

Gene targeting in embryonic stem cells has become the principal technology for m...

 
 
 
 
 
 

Latent TGF-β structure and activation ▶

 
 

Minlong Shi, Jianghai Zhu, Rui Wang, Xing Chen, Lizhi Mi et al.

 
 

Transforming growth factor (TGF)-β is stored in the extracellular matrix a...

 
 
 
 
 
 

X-ray structure of a bacterial oligosaccharyltransferase ▶

 
 

Christian Lizak, Sabina Gerber, Shin Numao, Markus Aebi & Kaspar P. Locher

 
 

Asparagine-linked glycosylation is a post-translational modification of proteins...

 
 
 
 
 
 

Control of visual cortical signals by prefrontal dopamine ▶

 
 

Behrad Noudoost & Tirin Moore

 
 

The prefrontal cortex is thought to modulate sensory signals in posterior cortic...

 
 
 
 
 
 

Forces between clustered stereocilia minimize friction in the ear on a subnanometre scale ▶

 
 

Andrei S. Kozlov, Johannes Baumgart, Thomas Risler, Corstiaen P. C. Versteegh & A. J. Hudspeth

 
 

The detection of sound begins when energy derived from an acoustic stimulus defl...

 
 
 
 
 
 

Transcriptomic analysis of autistic brain reveals convergent molecular pathology ▶

 
 

Irina Voineagu, Xinchen Wang, Patrick Johnston, Jennifer K. Lowe, Yuan Tian et al.

 
 

Autism spectrum disorder (ASD) is a common, highly heritable neurodevelopmental ...

 
 
 
 
 
 

Detection of prokaryotic mRNA signifies microbial viability and promotes immunity ▶

 
 

Leif E. Sander, Michael J. Davis, Mark V. Boekschoten, Derk Amsen, Christopher C. Dascher et al.

 
 

Live vaccines have long been known to trigger far more vigorous immune responses...

 
 
 
 
 
 

Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA ▶

 
 

Dong Wang, Ivan Garcia-Bassets, Chris Benner, Wenbo Li, Xue Su et al.

 
 

Mammalian genomes are populated with thousands of transcriptional enhancers that...

 
 
 
 
 
 

Converting nonsense codons into sense codons by targeted pseudouridylation ▶

 
 

John Karijolich & Yi-Tao Yu

 
 

All three translation termination codons, or nonsense codons, contain a uridine ...

 
 
 
 
 
 

Telomere shortening and loss of self-renewal in dyskeratosis congenita induced pluripotent stem cells ▶

 
 

Luis F. Z. Batista, Matthew F. Pech, Franklin L. Zhong, Ha Nam Nguyen, Kathleen T. Xie et al.

 
 

The differentiation of patient-derived induced pluripotent stem cells (iPSCs) to...

 
 
 
 
 
 

COP1 is a tumour suppressor that causes degradation of ETS transcription factors ▶

 
 

Alberto C. Vitari, Kevin G. Leong, Kim Newton, Cindy Yee, Karen O’Rourke et al.

 
 

The proto-oncogenes ETV1, ETV4 and ETV5 encode transcription factors in the E26 ...

 
 
 
 
 
 

News & Views

 
     
 
 
 
 
 

Animal behaviour: Born leaders ▶

 
 

Franz J. Weissing

 
 
 
 
 
 

Protein synthesis: Stop the nonsense ▶

 
 

Adrian R. Ferré-D'Amaré

 
 
 
 
 
 

Structural biology: Porthole to catalysis ▶

 
 

Reid Gilmore

 
 
 
 
 
 

Gene expression: The autism disconnect ▶

 
 

Željka Korade & Károly Mirnics

 
 
 
 
 
 

Research Highlights

 
     
 
 
 
 
 

Animal behaviour: Fitter fish lead the pack | Cancer therapeutics: Targeted drug fights melanoma | Neurogenetics: Extended hunt for autism genes | Neuroscience: How nicotine curbs weight gain | Biophysics: Fluorescent cells turned into lasers | Metagenomics: Movies of the body's bacteria

 
 
 
 

NEWS & COMMENT

 
 
 
 
 

Contaminated food for thought | Great ape debate | Democratizing clinical research | Virology: Potent tiny packages | Books in brief | Q&A: The adaptive lyricist | Extinctions: conserve not collate Megan Evans, Hugh Possingham & Kerrie Wilson | Extinctions: consider all species T. M. Brooks | Making society more resilient Akira S. Mori | Population decline is a long way off Robert Wyman | Brazilian soya: the argument for Rachael Garrett | Brazilian soya: the argument against Brenda Baletti | Worm scientist's identity revealed Mark J. F. Brown

 
 
 
 
 
 

More Biological Sciences ▶

 
 
 
 
 
 
 
 
 
 
   
 
 

Antibody, Protein and ELISA Solutions Provider:
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Chemical Sciences top
 
 
 
 
 
 

RESEARCH

 
 
 
 
 

Latest Online

 
     
 
 
 
 
 

Structure-based design of non-natural amino-acid inhibitors of amyloid fibril formation ▶

 
 

Stuart A. Sievers, John Karanicolas, Howard W. Chang, Anni Zhao, Lin Jiang et al.

 
 

Many globular and natively disordered proteins can convert into amyloid fibrils....

 
 
 
 
 
 

Subunit arrangement and phenylethanolamine binding in GluN1/GluN2B NMDA receptors ▶

 
 

Erkan Karakas, Noriko Simorowski & Hiro Furukawa

 
 

Since it was discovered that the anti-hypertensive agent ifenprodil has neuropro...

 
 
 
 
 
 

Articles and Letters

 
     
 
 
 
 
 

X-ray structure of a bacterial oligosaccharyltransferase ▶

 
 

Christian Lizak, Sabina Gerber, Shin Numao, Markus Aebi & Kaspar P. Locher

 
 

Asparagine-linked glycosylation is a post-translational modification of proteins...

 
 
 
 
 
 

Modular and predictable assembly of porous organic molecular crystals ▶

 
 

James T. A. Jones, Tom Hasell, Xiaofeng Wu, John Bacsa, Kim E. Jelfs et al.

 
 

Nanoporous molecular frameworks are important in applications such as separation...

 
 
 
 
 
 

Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA ▶

 
 

Dong Wang, Ivan Garcia-Bassets, Chris Benner, Wenbo Li, Xue Su et al.

 
 

Mammalian genomes are populated with thousands of transcriptional enhancers that...

 
 
 
 
 
 

Converting nonsense codons into sense codons by targeted pseudouridylation ▶

 
 

John Karijolich & Yi-Tao Yu

 
 

All three translation termination codons, or nonsense codons, contain a uridine ...

 
 
 
 
 
 

COP1 is a tumour suppressor that causes degradation of ETS transcription factors ▶

 
 

Alberto C. Vitari, Kevin G. Leong, Kim Newton, Cindy Yee, Karen O’Rourke et al.

 
 

The proto-oncogenes ETV1, ETV4 and ETV5 encode transcription factors in the E26 ...

 
 
 
 
 
 

News & Views

 
     
 
 
 
 
 

Protein synthesis: Stop the nonsense ▶

 
 

Adrian R. Ferré-D'Amaré

 
 
 
 
 
 

Structural biology: Porthole to catalysis ▶

 
 

Reid Gilmore

 
 
 
 
 
 

Research Highlights

 
     
 
 
 
 
 

Chemistry: Recipe for a good catalyst

 
 
 
 
 

More Chemical Sciences ▶

 
 
 
 
 
 
 
Physical Sciences top
 
 
 
 
 
 

RESEARCH

 
 
 
 
 

Articles and Letters

 
     
 
 
 
 
 

Black hole growth in the early Universe is self-regulated and largely hidden from view ▶

 
 

Ezequiel Treister, Kevin Schawinski, Marta Volonteri, Priyamvada Natarajan & Eric Gawiser

 
 

The formation of the first massive objects in the infant Universe remains imposs...

 
 
 
 
 
 

Zero outward flow velocity for plasma in a heliosheath transition layer ▶

 
 

Stamatios M. Krimigis, Edmond C. Roelof, Robert B. Decker & Matthew E. Hill

 
 

Voyager 1 has been in the reservoir of energetic ions and electrons that constit...

 
 
 
 
 
 

Emerging local Kondo screening and spatial coherence in the heavy-fermion metal YbRh2Si2 ▶

 
 

S. Ernst, S. Kirchner, C. Krellner, C. Geibel, G. Zwicknagl et al.

 
 

The entanglement of quantum states is both a central concept in fundamental phys...

 
 
 
 
 
 

Forces between clustered stereocilia minimize friction in the ear on a subnanometre scale ▶

 
 

Andrei S. Kozlov, Johannes Baumgart, Thomas Risler, Corstiaen P. C. Versteegh & A. J. Hudspeth

 
 

The detection of sound begins when energy derived from an acoustic stimulus defl...

 
 
 
 
 
 

News & Views

 
     
 
 
 
 
 

Condensed-matter physics: Microscopy of the macroscopic ▶

 
 

Piers Coleman

 
 
 
 
 
 

Astrophysics: Early black holes uncovered ▶

 
 

Alexey Vikhlinin

 
 
 
 
 
 

Research Highlights

 
     
 
 
 
 
 

Photonics: Rainbow from a single LED

 
 
 
 

NEWS & COMMENT

 
 
 
 
 

Books in brief

 
 
 
 
 
 

More Physical Sciences ▶

 
 
 
 
 
 
 
Earth & Environmental Sciences top
 
 
 
 
 
 

RESEARCH

 
 
 
 
 

Latest Online

 
     
 
 
 
 
 

Earthquakes: The lessons of Tohoku-Oki ▶

 
 

Jean-Philippe Avouac

 
 
 
 
 
 

Coseismic and postseismic slip of the 2011 magnitude-9 Tohoku-Oki earthquake ▶

 
 

Shinzaburo Ozawa, Takuya Nishimura, Hisashi Suito, Tomokazu Kobayashi, Mikio Tobita et al.

 
 

Most large earthquakes occur along an oceanic trench, where an oceanic plate sub...

 
 
 
 
 
 

Research Highlights

 
     
 
 
 
 
 

Geochemistry: Mercury on the decline

 
 
 
 

NEWS & COMMENT

 
 
 
 
 

Full transparency | Books in brief

 
 
 
 
 

CAREERS

 
 
 
 
 

Fieldwork: Close quarters

 
 
 
 
 
 

More Earth & Environmental Sciences ▶

 
 
 
 
 
 
 
 
 
 
   
 
 

Nature Insight: Intestinal Networks in Health and Disease
This Insight explores the complex networks involved in maintaining a healthy gut, and may point to future strategies for more effective preventative and therapeutic measures. Access the Insight free online for six months.

Produced with support from: YAKULT HONSHA CO., LTD

 
 
 
 
 
 
 
Careers & Jobs top
 
 
 
 
 
 
 

Fieldwork: Close quarters ▶

 
 

Cramped living conditions, unruly colleagues or crowded schedules can be challenging for the most intrepid scientist.

 
 
 
     
 
 
 

Postdocs with promise ▶

 
 

UK university offers fellowships leading to academic posts.

 
 
 
     
 
 
 

Research centres open ▶

 
 

Early-career scientists sought to join collaborative institutions in Germany.

 
 
 
     
 
 
 

Women feel isolated ▶

 
 

Isolation and lack of confidence hold back careers of female postdocs, says US association.

 
 
 
     
 
 
 

Careers related news & comment

 
     
 
 
 
 
 

Democratizing clinical research | Making society more resilient Akira S. Mori | Population decline is a long way off Robert Wyman | Brazilian soya: the argument for Rachael Garrett | Brazilian soya: the argument against Brenda Baletti | Peer reviews: some are already public Bernd Pulverer | Change Chinese returnee rules Jun Li

 
 
 
 
 
 

naturejobs.com

naturejobs.com Science jobs of the week

 
 
 

Postdoctoral Research Trainee - Center for Cancer Research

 
 

University of Tennessee Health Science Center Memphis, TN

 
 
 
 
 

Atlas of MS Update Coordinator

 
 

Multiple Sclerosis International Federation London, United Kingdom

 
 
 
 
 

Bioinformatics Analysts

 
 

Cancer Research UK Cambridge Research Institute Cambridge, Cambridgeshire, United Kingdom

 
 
 
 

No matter what your career stage, student, postdoc or senior scientist, you will find articles on naturejobs.com to help guide you in your science career. Keep up-to-date with the latest sector trends, vote in our reader poll and sign-up to receive the monthly Naturejobs newsletter.

 
 
 
 
  Nature events featured events  
 
 
 
 

natureevents.com - The premier science events website

natureevents featured events

 
 
 
 

Lyophilization Technology – Practical Application of the Scientific Principles

 
 

13.-15.06.11 CA, US

 
 
 
 

Nature events is the premier resource for scientists looking for the latest scientific conferences, courses, meetings and symposia. Featured across Nature Publishing Group journals and centrally at natureevents.com it is an essential reference guide to scientific events worldwide.

 
 
 
 
 
 
 

Futures

 
     
 
 
 
 
 

Silent evolution ▶

 
 

C. N. Simms

 
 

It's only a matter of time....

 
 
 
 
     
 

 

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