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Volume 490 Number 7421 |
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nature |
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The science that matters. Every week. | |
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Hamamatsu's ORCA-Flash4.0 camera now includes ImageConductor Connectivity™, so it's enabled for both USB 3.0 and high-speed Camera Link. If your imaging speed is 30 fps at full 4-megapixel resolution, then the default USB 3.0 configuration is right for you. If you need something faster, upgrade to an optional Camera Link board to achieve 100 fps at full resolution. Both options deliver low noise, high sensitivity imaging. |
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Jump to the content that matters to you |
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Near-infrared background anisotropies from diffuse intrahalo light of galaxies
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In the recent decades, space telescopes have detected variations in the near-infrared background radiation that cannot be explained by emissions from known galaxies. New data from the Spitzer space telescope point to an origin for this 'extra' light that had not been suggested previously: the fluctuations arise from intrahalo stars that were stripped from their host galaxies during galaxy collisions and have migrated to distant orbits in the galaxies' dark-matter haloes. |
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Recent changes to the Gulf Stream causing widespread gas hydrate destabilization
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Methane hydrate, an ice-like form of methane and water, in ocean sediments represents one of the largest reservoirs of organic carbon on Earth. Sudden methane release from this sink could cause abrupt climate change. This study uses seismic data and modelling to reveal clathrate destabilization along the United States Eastern margin, probably caused by warming of the Gulf Stream, or a slight shift in its position. For now the climatic impact of the methane released by clathrate destabilization is uncertain, as it is not clear how much of the methane would actually enter the atmosphere and how much would stay in the oceans.
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Black mamba venom peptides target acid-sensing ion channels to abolish pain
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This paper reports the isolation of a new class of peptides from the African snake black mamba which can abolish pain through inhibition of particular subtypes of acid-sensing channels expressed either in central or peripheral neurons. These peptides — called mambalgins — are as effective as morphine in pain relief but are nontoxic in mice and do not induce tolerance or respiratory distress. |
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In this week's podcast: the pesticide peril facing bumblebees, the biological roots of political preference, and editing DNA to prevent mitochondrial diseases. |
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A vote for science ▶ |
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In support for science and environmental issues, Barack Obama and the Democrats have a clear advantage over Mitt Romney and the Republican Party. |
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Banish cronyism ▶ |
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A Texas cancer-research fund needs big fixes to restore badly eroded trust. |
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Shock and law ▶ |
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The Italian system’s contempt for its scientists is made plain by the guilty verdict in L’Aquila. |
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Throw off the cloak of invisibility ▶ |
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Improving Wikipedia entries for notable women scientists should be only the start for a higher profile for women in science, says Athene Donald. |
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Seven days: 19–25 October 2012 ▶ |
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The week in science: Manslaughter verdict rocks seismology; European rethink on biofuels; and battery firm A123 declares bankruptcy. |
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Toxicology: The learning curve ▶ |
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Researchers say that some chemicals have unexpected and potent effects at very low doses — but regulators aren't convinced. |
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Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes ▶ |
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Andrew V. Biankin, Nicola Waddell, Karin S. Kassahn, Marie-Claude Gingras, Lakshmi B. Muthuswamy et al. |
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Exome sequencing and copy number analysis are used to define genomic aberrations in early sporadic pancreatic ductal adenocarcinoma; among the findings are mutations in genes involved in chromatin modification and DNA damage repair, and frequent and diverse somatic aberrations in genes known as embryonic regulators of axon guidance. |
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Filamentous bacteria transport electrons over centimetre distances ▶ |
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Christian Pfeffer, Steffen Larsen, Jie Song, Mingdong Dong, Flemming Besenbacher et al. |
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Oxygen reduction occurring in the surface layer of marine sediments can be coupled to sulphide oxidation in deeper anoxic layers; it is now shown that the electron transfer is mediated by filamentous bacteria acting like living electrical cables. |
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Towards germline gene therapy of inherited mitochondrial diseases ▶ |
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Masahito Tachibana, Paula Amato, Michelle Sparman, Joy Woodward, Dario Melguizo Sanchis et al. |
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Oxygen reduction occurring in the surface layer of marine sediments can be coupled to sulphide oxidation in deeper anoxic layers; it is now shown that the electron transfer is mediated by filamentous bacteria acting like living electrical cables. |
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The genomic landscape of species divergence in Ficedula flycatchers OPEN ▶ |
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Hans Ellegren, Linnéa Smeds, Reto Burri, Pall I. Olason, Niclas Backström et al. |
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The results of sequencing the collared flycatcher genome, and re-sequencing population samples from this species and its sister species, the pied flycatcher, reveal the existence of areas of high sequence divergence compared to background levels, and suggest that complex repeat structures may drive species divergence and that sex chromosomes and autosomes are at different stages of speciation. |
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Direct imaging of RecA nucleation and growth on single molecules of SSB-coated ssDNA ▶ |
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Jason C. Bell, Jody L. Plank, Christopher C. Dombrowski & Stephen C. Kowalczykowski |
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Single-molecule analysis of RecA filament assembly on its in vivo substrate, SSB-coated single-stranded DNA, reveals that a dimer of RecA is required for nucleation, and is followed by bidirectional growth of the filament through monomer addition; the recombination mediator RecOR accelerates nucleation and growth, and the addition of RecF further stimulates nucleation. |
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Resurrection of endogenous retroviruses in antibody-deficient mice ▶ |
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George R. Young, Urszula Eksmond, Rosalba Salcedo, Lena Alexopoulou, Jonathan P. Stoye et al. |
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Novel pathogenic infectious retroviruses, generated by recombination between replication-defective endogenous retroviruses in the absence of a functional antibody response, are identified; these recombinant retroviruses establish infection of mouse colonies and ultimately cause cancer. |
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The TEL patch of telomere protein TPP1 mediates telomerase recruitment and processivity ▶ |
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Jayakrishnan Nandakumar, Caitlin F. Bell, Ina Weidenfeld, Arthur J. Zaug, Leslie A. Leinwand et al. |
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Using separation-of-function mutations of TPP1 that inhibit telomerase binding while maintaining telomere capping, a region on the surface of TPP1, the TEL patch, is identified and found to be required for both binding telomerase and enhancing its processivity. |
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Combined pesticide exposure severely affects individual- and colony-level traits in bees ▶ |
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Richard J. Gill, Oscar Ramos-Rodriguez & Nigel E. Raine |
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Chronic exposure of bumblebees to two pesticides (a neonicotinoid and a pyrethroid) independently and in combination, at concentrations approximating field-level exposure, impairs natural foraging behaviour and increases worker mortality, with knock-on effects for brood development and colony success. |
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A bimodular mechanism of calcium control in eukaryotes ▶ |
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Henning Tidow, Lisbeth R. Poulsen, Antonina Andreeva, Michael Knudsen, Kim L. Hein et al. |
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Detailed characterization of the regulatory domain of a plasma-membrane Ca2+-ATPase — a calcium pump — in complex with calmodulin results in a two-step structural model that explains how calmodulin-mediated regulation of pump activation affords highly responsive control over the intracellular calcium concentration in eukaryotes. |
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Structural insight into the type-II mitochondrial NADH dehydrogenases ▶ |
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Yue Feng, Wenfei Li, Jian Li, Jiawei Wang, Jingpeng Ge et al. |
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Analysis of the respective crystal structures of the yeast single-component type-II NADH dehydrogenase Ndi1 in its substrate-free form and when bound to NADH, ubiquinone and NADH–ubiquinone shows that Ndi1 homodimerization through its carboxy-terminal domain is critical for its catalytic activity and membrane targeting. |
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Structure and mechanism of a bacterial sodium-dependent dicarboxylate transporter ▶ |
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Romina Mancusso, G. Glenn Gregorio, Qun Liu & Da-Neng Wang |
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The cytosolic concentration of citrate partially depends on its direct import across the plasma membrane by the Na+-dependent citrate transporter (NaCT); here the X-ray crystal structure of a bacterial homologue of NaCT is reported, which, along with transport-activity studies suggests how specific conformational changes facilitate substrate translocation across the cellular membrane. |
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BTB-ZF factors recruit the E3 ligase cullin 3 to regulate lymphoid effector programs ▶ |
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Rebecca Mathew, Michael P. Seiler, Seth T. Scanlon, Ai-ping Mao, Michael G. Constantinides et al. |
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The E3 ubiquitin ligase cullin 3 is shown to bind BTB-zinc finger transcription factors to direct the ubiquitination of nuclear chromatin-associated factors to control transcription and cell-fate decisions in B- and T-cell populations. |
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Compensatory dendritic cell development mediated by BATF–IRF interactions ▶ |
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Roxane Tussiwand, Wan-Ling Lee, Theresa L. Murphy, Mona Mashayekhi, Wumesh KC et al. |
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The roles of BATF transcription factors in dendritic cell differentiation are studied, providing evidence for molecular compensation by related family members; compensation is based on the interaction of the BATF leucine zipper domains with IRF factors to mediate cooperative gene activation. |
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Structure of the agonist-bound neurotensin receptor ▶ |
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Jim F. White, Nicholas Noinaj, Yoko Shibata, James Love, Brian Kloss et al. |
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The X-ray crystal structure of a rat neurotensin receptor in complex with the C-terminal portion of neurotensin is presented; this is the first structure of a member of the β group of class A G-protein-coupled receptors. |
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Epistasis as the primary factor in molecular evolution ▶ |
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Michael S. Breen, Carsten Kemena, Peter K. Vlasov, Cedric Notredame & Fyodor A. Kondrashov |
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A comparison of more than 1,000 orthologues of diverse proteins shows that the rate of amino-acid substitution in recent evolution is an order of magnitude lower than that expected in the absence of epistasis, indicating that epistasis is pervasive throughout protein evolution. |
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BATF–JUN is critical for IRF4-mediated transcription in T cells ▶ |
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Peng Li, Rosanne Spolski, Wei Liao, Lu Wang, Theresa L. Murphy et al. |
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The pleiotropic transcription factor IRF4 is shown to regulate CD4+ T-cell differentiation and TH17 function through cooperative binding interactions with BATF and JUN family proteins via AP1–IRF4 composite elements (AICEs). |
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Black mamba venom peptides target acid-sensing ion channels to abolish pain ▶ |
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Sylvie Diochot, Anne Baron, Miguel Salinas, Dominique Douguet, Sabine Scarzello et al. |
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A new class of peptides, mambalgins, is isolated from the African snake the black mamba, which can abolish pain through inhibition of particular subtypes of acid-sensing ion channels expressed either in central or peripheral neurons. |
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Clonal allelic predetermination of immunoglobulin-κ rearrangement ▶ |
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Marganit Farago, Chaggai Rosenbluh, Maya Tevlin, Shira Fraenkel, Sharon Schlesinger et al. |
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Immunoglobulin genes are expressed from either the maternal or paternal chromosome; it is now shown that in early haematopoietic stem cells, an individual cell can choose either of the two alleles, but as they develop they become committed to only one. |
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Crystal structure of the multidrug transporter P-glycoprotein from Caenorhabditis elegans ▶ |
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Mi Sun Jin, Michael L. Oldham, Qiuju Zhang & Jue Chen |
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Biochemical and structural analysis of the drug transporter P-glycoprotein in Caenorhabditis elegans at a resolution of 3.4 angstroms is used to generate a homology model of the human protein and supports a picture in which P-glycoprotein uses the energy from ATP hydrolysis to expel lipophilic molecules from the inner leaflet of the cell membrane. |
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The new Infinium® HumanCore family of BeadChips from Illumina is specially designed for large-scale studies. The content has been carefully selected by leading institutions and researchers. Downstream analysis is easy. Sample tracking is robust. Get the details on early access pricing, available for a limited time only. |
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Direct imaging of RecA nucleation and growth on single molecules of SSB-coated ssDNA ▶ |
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Jason C. Bell, Jody L. Plank, Christopher C. Dombrowski & Stephen C. Kowalczykowski |
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Single-molecule analysis of RecA filament assembly on its in vivo substrate, SSB-coated single-stranded DNA, reveals that a dimer of RecA is required for nucleation, and is followed by bidirectional growth of the filament through monomer addition; the recombination mediator RecOR accelerates nucleation and growth, and the addition of RecF further stimulates nucleation. |
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The TEL patch of telomere protein TPP1 mediates telomerase recruitment and processivity ▶ |
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Jayakrishnan Nandakumar, Caitlin F. Bell, Ina Weidenfeld, Arthur J. Zaug, Leslie A. Leinwand et al. |
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Using separation-of-function mutations of TPP1 that inhibit telomerase binding while maintaining telomere capping, a region on the surface of TPP1, the TEL patch, is identified and found to be required for both binding telomerase and enhancing its processivity. |
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A bimodular mechanism of calcium control in eukaryotes ▶ |
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Henning Tidow, Lisbeth R. Poulsen, Antonina Andreeva, Michael Knudsen, Kim L. Hein et al. |
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Detailed characterization of the regulatory domain of a plasma-membrane Ca2+-ATPase — a calcium pump — in complex with calmodulin results in a two-step structural model that explains how calmodulin-mediated regulation of pump activation affords highly responsive control over the intracellular calcium concentration in eukaryotes. |
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Structural insight into the type-II mitochondrial NADH dehydrogenases ▶ |
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Yue Feng, Wenfei Li, Jian Li, Jiawei Wang, Jingpeng Ge et al. |
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Analysis of the respective crystal structures of the yeast single-component type-II NADH dehydrogenase Ndi1 in its substrate-free form and when bound to NADH, ubiquinone and NADH–ubiquinone shows that Ndi1 homodimerization through its carboxy-terminal domain is critical for its catalytic activity and membrane targeting. |
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Structure and mechanism of a bacterial sodium-dependent dicarboxylate transporter ▶ |
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Romina Mancusso, G. Glenn Gregorio, Qun Liu & Da-Neng Wang |
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The cytosolic concentration of citrate partially depends on its direct import across the plasma membrane by the Na+-dependent citrate transporter (NaCT); here the X-ray crystal structure of a bacterial homologue of NaCT is reported, which, along with transport-activity studies suggests how specific conformational changes facilitate substrate translocation across the cellular membrane. |
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Structure of the agonist-bound neurotensin receptor ▶ |
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Jim F. White, Nicholas Noinaj, Yoko Shibata, James Love, Brian Kloss et al. |
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The X-ray crystal structure of a rat neurotensin receptor in complex with the C-terminal portion of neurotensin is presented; this is the first structure of a member of the β group of class A G-protein-coupled receptors. |
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Forming all-carbon quaternary stereogenic centres in acyclic systems from alkynes ▶ |
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Yury Minko, Morgane Pasco, Lukas Lercher, Mark Botoshansky & Ilan Marek |
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The synthesis of an all-carbon quaternary stereocentre in an acyclic system is reported; the chemical transformation involves the formation of two new stereogenic centres—including the challenging all-carbon quaternary one in an aldol adduct—via a combined carbometalation–oxidation reaction, giving a stereodefined trisubstituted enolate. |
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The origin of the terrestrial noble-gas signature ▶ |
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Svyatoslav S. Shcheka & Hans Keppler |
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The solubility of argon in lower mantle minerals is shown to be much higher than for xenon, so that the depletion of xenon relative to argon in Earth’s atmosphere can be explained by mantle degassing. |
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Crystal structure of the multidrug transporter P-glycoprotein from Caenorhabditis elegans ▶ |
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Mi Sun Jin, Michael L. Oldham, Qiuju Zhang & Jue Chen |
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Biochemical and structural analysis of the drug transporter P-glycoprotein in Caenorhabditis elegans at a resolution of 3.4 angstroms is used to generate a homology model of the human protein and supports a picture in which P-glycoprotein uses the energy from ATP hydrolysis to expel lipophilic molecules from the inner leaflet of the cell membrane. |
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Lower satellite-gravimetry estimates of Antarctic sea-level contribution ▶ |
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Matt A. King, Rory J. Bingham, Phil Moore, Pippa L. Whitehouse, Michael J. Bentley et al. |
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A new model of glacial isostatic adjustment used in conjunction with GRACE satellite data suggests that ice loss from Antarctica is contributing 0.19 millimetres per year to global mean sea level, which is substantially less than previous GRACE-based estimates. |
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Near-infrared background anisotropies from diffuse intrahalo light of galaxies ▶ |
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Asantha Cooray, Joseph Smidt, Francesco De Bernardis, Yan Gong, Daniel Stern et al. |
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Measurements of the anisotropy power spectrum of the cosmic near-infrared background radiation show the clustering amplitude to be larger than existing model predictions involving distant primordial galaxies or nearby faint galaxies: the fluctuations are proposed to originate from intrahalo stars of all galaxies with dark-matter haloes of 109 to 1012 solar masses at redshifts of about 1 to 4. |
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Quasi-periodic events in crystal plasticity and the self-organized avalanche oscillator ▶ |
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Stefanos Papanikolaou, Dennis M. Dimiduk, Woosong Choi, James P. Sethna, Michael D. Uchic et al. |
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A crystalline material is investigated that responds to a slowly increasing external stress by exhibiting impulsive ‘avalanche’ behaviour as well as smooth stress release that is approximately as slow as the external stress rate; unusual oscillatory behaviour in the avalanche time series is reported. |
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Epistasis as the primary factor in molecular evolution ▶ |
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Michael S. Breen, Carsten Kemena, Peter K. Vlasov, Cedric Notredame & Fyodor A. Kondrashov |
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A comparison of more than 1,000 orthologues of diverse proteins shows that the rate of amino-acid substitution in recent evolution is an order of magnitude lower than that expected in the absence of epistasis, indicating that epistasis is pervasive throughout protein evolution. |
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Combined pesticide exposure severely affects individual- and colony-level traits in bees ▶ |
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Richard J. Gill, Oscar Ramos-Rodriguez & Nigel E. Raine |
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Chronic exposure of bumblebees to two pesticides (a neonicotinoid and a pyrethroid) independently and in combination, at concentrations approximating field-level exposure, impairs natural foraging behaviour and increases worker mortality, with knock-on effects for brood development and colony success. |
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Lower satellite-gravimetry estimates of Antarctic sea-level contribution ▶ |
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Matt A. King, Rory J. Bingham, Phil Moore, Pippa L. Whitehouse, Michael J. Bentley et al. |
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A new model of glacial isostatic adjustment used in conjunction with GRACE satellite data suggests that ice loss from Antarctica is contributing 0.19 millimetres per year to global mean sea level, which is substantially less than previous GRACE-based estimates. |
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The origin of the terrestrial noble-gas signature ▶ |
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Svyatoslav S. Shcheka & Hans Keppler |
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The solubility of argon in lower mantle minerals is shown to be much higher than for xenon, so that the depletion of xenon relative to argon in Earth’s atmosphere can be explained by mantle degassing. |
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Nature Outlook: Physics Masterclass From subatomic particles to cosmic-scale phenomena, Nature Outlook: Physics Masterclass uses the Lindau Nobel Laureate Meeting 2012 to launch an examination of some of the biggest breakthroughs in physics. Access the Outlook free online for six months. Supported by: Mars, Incorporated |
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Scientists wanted ▶ |
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Emerging regions have robust collaborations, but need more researchers. |
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Misconduct policy ▶ |
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Research council lays out tactics for addressing breaches of research integrity. |
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Careers related news & comment |
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naturejobs.com Science jobs of the week |
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No matter what your career stage, student, postdoc or senior scientist, you will find articles on naturejobs.com to help guide you in your science career. Keep up-to-date with the latest sector trends, vote in our reader poll and sign-up to receive the monthly Naturejobs newsletter. |
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• Nature events featured events |
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natureevents featured events |
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Nature events is the premier resource for scientists looking for the latest scientific conferences, courses, meetings and symposia. Featured across Nature Publishing Group journals and centrally at natureevents.com it is an essential reference guide to scientific events worldwide. |
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